Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0621 ATGTATGGTATGCTCAAGGACATTAACACTGCACGCCACTTGTTCAATGAAATGGTCAATGCAGATTTAGTGGCTTGGAACTCTATCATAGACTCTCATGTCTATTGTGGAAACTACTGGGAGGCACTCCACCTGTTCACCAGAATGATTGATAGTGGCATACAACCCGATGATGCCACTTTGGTTGTGACCCTCTCAGCATGTGCTGCAATCGGAGCTCTGGATTTTGGGAGGCAGGTTCATTCCTGTATCAGAGACGCCGATGTTGCTGATATTACATCGGGCTGCAATTCCCTTGTTGACATGTATGTCAAGTGTGGAGCATTGGATGAAGCGTACCACACATTTTGCAAGATGAAACTGAAGAGCATAGTTTCATGGAATATCATGATTCTCGCGCTTGCATCACATGGTAATGGAGAAGATGCTTTGGCACTTCTTCGAAAATGGTGGAAGAGAAAGAGAACTTTGTTAGCTGCATGTCGAGTTCATGGACGGGTTGAACTTGGAGAGAAGGTGAGAAAACACCTATTGGAATTGGAACCAGATCATAGCAGTGACTATGTTCTTGCCAACATCACAACCAGCATTCAGCCTCTACTATTGTCAAAGGACCCTTGCAGGGGCAAAATCAAAAGAGCCTCTTTATGTAAAGTGAATGGCTTGCCAGATTTTCCCCTGATGGCTGTTATAGTTGAGCAAATTGAAGGTAACATAGATTATATAACTACTAAATCTGTTTGGCATCTCAGTGATGAAGCAATCAAGAATGTCTATTCATATTACATATTATTCACTGTTTGGGGCTGTTTGTTCTTCGGTTCCATGAAGGACCCCTATTATGACTCAGAAACATATAGGGGAGATGGAGGAGACGGTACTGGTAATTGGATTTATGAGAAGCAAGAAGTAATGGAAGCAGATGCTAGAGAAGCTCTGTTGCGAGAGGAGTTGATAGAGGAGATTGAACAAAAGGTTGGGGGACTGAGGGAATTGGAAGAAGCTGGAAAGAAAGAGGAGGAACTTGTAAAATGA 1035 0.429 MYGMLKDINTARHLFNEMVNADLVAWNSIIDSHVYCGNYWEALHLFTRMIDSGIQPDDATLVVTLSACAAIGALDFGRQVHSCIRDADVADITSGCNSLVDMYVKCGALDEAYHTFCKMKLKSIVSWNIMILALASHGNGEDALALLRKWWKRKRTLLAACRVHGRVELGEKVRKHLLELEPDHSSDYVLANITTSIQPLLLSKDPCRGKIKRASLCKVNGLPDFPLMAVIVEQIEGNIDYITTKSVWHLSDEAIKNVYSYYILFTVWGCLFFGSMKDPYYDSETYRGDGGDGTGNWIYEKQEVMEADAREALLREELIEEIEQKVGGLRELEEAGKKEEELVK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0621 344 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Lele19g0621 344 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 4, CHLOROPLASTIC 207 341 IPR034570 GO:0009535|GO:0009773|GO:0010598
Lele19g0621 344 Gene3D Tetratricopeptide repeat domain 76 199 IPR011990 GO:0005515
Lele19g0621 344 Pfam PPR repeat family 22 69 IPR002885 -
Lele19g0621 344 Pfam PPR repeat 96 122 IPR002885 -
Lele19g0621 344 Pfam PPR repeat 125 152 IPR002885 -
Lele19g0621 344 Coils Coil 315 335 - -
Lele19g0621 344 Gene3D Tetratricopeptide repeat domain 1 75 IPR011990 GO:0005515
Lele19g0621 344 TIGRFAM PPR: pentatricopeptide repeat domain 24 57 IPR002885 -
Lele19g0621 344 TIGRFAM PPR: pentatricopeptide repeat domain 125 153 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0621 Lele-ChrLele19 3584354 3588289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0621 1 193 Glycoside Hydrolase AT3G49170 28.571 1.01e-19 88.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0939 17 20423024 20424199 Lele19g0621 19 3584354 3588289 hybridization
Lele18g0588 18 3529432 3530790 Lele19g0621 19 3584354 3588289 hybridization