Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0705 ATGCGGTGTTTTCTTTCGTGGTTATTGGCCTTAGCATCCTTATTGTCGCCGGTATCATTAGTATACAGCGGATTGCCGAGGAGTTTTCTGCCTCTTGAACGAGCTATTCCTCTAGGCCATCCGGTGGAGCTGGAAGTACTCAGAGCACGTGACAGAGCCAGGCATGCCCGAATCTTGAAAGGTGTGGAAGGCGGTGTAGTCGACTTCTCAGTCGAAGGGACCTCCGATCCTTACGCCATTGGGCTGTACTTTACGAAAGTGAAGCTGGGCTCTCCTCCAAGAGAATTCAGAGTCCAGATTGATACTGGAAGTGACCTATTGTGGGTTGCTTGCAATGCTTGCAGTGATTGCCCTCGATCTAGTGACCTGGGGATTGAGCTCAATTTCTTTGATAAAGCCGGCTCATCCACGGCCATGCCAGTGTCCTGCTCAGACCGAATATGTACTTCTGCGTTACAAAGTACTGGAACTGAATGCTCCCCGCAGATTAGTCAGTGCAGCTACACTTTCCAGTATGGAGATGGAAGCGGGACATCAGGTTATTACGTATCTGATCTGATGCATTTTGACACGATGCTGGGACAATCTATGCTTGCCAACTCTTCAGCTAATGTTGTTTTCGGGTGTAGCACCTATCAATCAGGAGAATTGACAAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGTCCTGGTGCTTTATCTGTTATCTCACAACTGTCATCACGAGGCATGACACCTGGGGTCTTCTCTCATTGCCTAAAAGGAGAAGGCAATGGAGGAGGCATATTAGTTCTTGGCGAGATTTTGGAGCCAAGTATTGTTTATAGCCCACTAGTCCCATCACAGCCCCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACCCCTCCCAATTGATTCAGCTGTGTTTGCAACATTTAACAACCAAGGAACTATAGTTGACTCTGGTACAACATTGGCATACTTTGTTCAAGAAGCATATGATCCTATTATTAATGCTATCACAACTGCTGTGTCACAAACAGCGAATCCCGTTATTTCAAAAGGAAACCAATGTTATCTGGTCTCAAGCAGCATAGGTGACATATTTCCTCCAGTCAGTTTAAATTTTGCAGGCGGGGCTTCCATGGTTGTAAAACCCGAACAGTACCTTATTCGTTATGGTTTCCTTGATGATTCTGCAATGTGGTGTATGGGTTTCCAGAAGGCACAAGAAGGCGTTACAATTTTAGGAGATATTGTCCTAAAAGATAAAATTTTTGTCTATGACTTGGCTCATCAACGAATTGGGTGGACTAACTATGATTGTTCCTTGTCTGTAAATGTCTCCCTGACGACGAGCAAGGATGAGTACATCAATGCAAGAAAGCGGAGTGCAAGTAGCTCCCAGATGGATACTCTCACCAATTTGCTACCCGTTAGCATCGGCACTCTCATAGTGTACATATTAGCTTTCATGTAG 1476 0.4492 MRCFLSWLLALASLLSPVSLVYSGLPRSFLPLERAIPLGHPVELEVLRARDRARHARILKGVEGGVVDFSVEGTSDPYAIGLYFTKVKLGSPPREFRVQIDTGSDLLWVACNACSDCPRSSDLGIELNFFDKAGSSTAMPVSCSDRICTSALQSTGTECSPQISQCSYTFQYGDGSGTSGYYVSDLMHFDTMLGQSMLANSSANVVFGCSTYQSGELTKTDKAVDGIFGFGPGALSVISQLSSRGMTPGVFSHCLKGEGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQPLPIDSAVFATFNNQGTIVDSGTTLAYFVQEAYDPIINAITTAVSQTANPVISKGNQCYLVSSSIGDIFPPVSLNFAGGASMVVKPEQYLIRYGFLDDSAMWCMGFQKAQEGVTILGDIVLKDKIFVYDLAHQRIGWTNYDCSLSVNVSLTTSKDEYINARKRSASSSQMDTLTNLLPVSIGTLIVYILAFM 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0705 491 Gene3D Acid Proteases 270 447 IPR021109 -
Lele16g0705 491 Pfam Xylanase inhibitor C-terminal 286 437 IPR032799 -
Lele16g0705 491 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Lele16g0705 491 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Lele16g0705 491 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Lele16g0705 491 Gene3D Acid Proteases 67 269 IPR021109 -
Lele16g0705 491 ProSiteProfiles Peptidase family A1 domain profile. 83 437 IPR033121 -
Lele16g0705 491 FunFam Aspartic proteinase-like protein 2 270 448 - -
Lele16g0705 491 CDD pepsin_A_like_plant 83 441 IPR034161 -
Lele16g0705 491 FunFam Aspartic proteinase-like protein 2 66 269 - -
Lele16g0705 491 Pfam Xylanase inhibitor N-terminal 83 268 IPR032861 -
Lele16g0705 491 PANTHER ASPARTYL PROTEASES 30 435 IPR001461 GO:0004190|GO:0006508
Lele16g0705 491 SUPERFAMILY Acid proteases 78 444 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0705 Lele-ChrLele16 3972280 3976150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele16g0705 78 442 Miscellaneous Gene Families AT1G44130 29.427 5.68e-45 160
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1002 06 6217264 6217773 Lele16g0705 16 3972280 3976150 CCT
Lele07g1185 07 7143484 7144584 Lele16g0705 16 3972280 3976150 CCT
Lele05g1137 05 7100955 7105378 Lele16g0705 16 3972280 3976150 CCT
Lele13g1714 13 25666901 25671060 Lele16g0705 16 3972280 3976150 hybridization
Lele14g1658 14 24063950 24067817 Lele16g0705 16 3972280 3976150 hybridization