Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0318 ATGAAGTACGTGCTGATCACCGGTGGAGTTGTGAGTGGCCTGGGCAAAGGCGTGACGGCGAGCAGCATAGGGGTCGTGCTCAAGGCCTGTGGCCTTCGTGTCACTTCCATCAAAATTGATCCATACCTGAATATAGATGCTGGTACTATGTCTCCTTTTGAACATGGAGAAGTTTTTGTTATCGACGATGGTGGAGAGGTTGATCTGGATTTGGGAAATTATGAGCGCTTCCTAGATGTCACACTTACAAAGAATAACAATATCACCACTGGAAAAATATACCAGTCTGTTCTCGAGAAGGAACGTAAGGGTGATTACCTTGGAAAAACTGTTCAGGTGGTACCACACATCACAGATGCCATAAAAGATTGGATTGAGTCAGTTGCTGTGATTCCTGTGGATGGGAAGGAGGGGCCAGCAGATGTTTGTGTGATTGAGCTTGGAGGCACTGTGGGTGACATTGAATCTATGCCATTTATTGAGGCTTTACGGCAATTGTCCTTTGTTGTTGGATCCGACAACTTCTGTCTCATCCATGTTAGCCTAATACCTGTGTTGGGTGTTGTGGGAGAGCAAAAAACAAAGCCTACACAACATAGTGTCAGGGAACTGAGAGCATTGGGTTTGACTCCTCACCTTTTAGCATGCCGATCTGCTGAGCCTCTTTTGGATAATACAAAGGATAAACTCTCACAGTTTTGCCATGTTTCGATTGATAATATTCTGAATATTCATGATGTACCAAACATTTGGCACATTCCTCTCTTACTTAGGAACCAAAATGCGCACCATTCAATTCTGAAGCAGCTTGACTTACTCAGCATTGCCGTGCCTCCTGACTTAAGGAGTTGGACGAAGATGGCTGAGACTTATGATAATATTACTGATTCTGTGAGAATTGCAATGGTGGGGAAATATGTTGGCCTACAAGATTCATATTTATCTGTCATGAAGGCTCTTCTGCACGCTTGCATTGCATGCTCATTGAGGCCATCGATTGATTGGATTGCAGCTTCTGACCTTGAAGATGATACTGCAAAATCGCAACCAGAAGCATATGCTGATGCCTGGAAGACTCTGAGGAGAGCAGCTTGTGTCTTGGTTCCTGGTGGATTTGGAGATCGTGGTGTGAGAGGTATGATGCTAGCTGCCAGATATGCCAGAGAGAACAATGTTCCATATTTGGGAATTTGCTTGGGAATGCAGATTGCTGTGATTGAGTATGCAAGATCGGTTCTGGGTTGGGAAAGGGCAAACAGTGTAGAGTTTGATGCCCAAACGCCAAATCCTGTTGTGATTTTCATGCCTGAGGGTTCCCGAACACACATGGGAAGCACCATGAGGCTAGGATCTCGTAGAACACTATTCCAGACACCTGATTGTATTACTTCCAAGCTGTACCACAACTCACAGTATGTGGATGAGCGGCATCGTCATAGATATGAGGTAAACCCAGATGTTATTGGAACACTAGAAGAAGCTGGGCTAAATTTTGTTGGAAGAGATGAAAGTGGAAAGCGAATGGAAATCCTAGAGCTTCCAAGTCATCCATTCTACGTAGGCGTGCAATTTCATCCTGAATTTAAATCACGGCCTGCTAAACCCTCTGCTTTATTTCTAGGTCTGATTTTGGCGGCAACAGGGAAGTTGGAAGCCCACATGAGTGGTTATGAAAATGGAAGTTAA 1686 0.4448 MKYVLITGGVVSGLGKGVTASSIGVVLKACGLRVTSIKIDPYLNIDAGTMSPFEHGEVFVIDDGGEVDLDLGNYERFLDVTLTKNNNITTGKIYQSVLEKERKGDYLGKTVQVVPHITDAIKDWIESVAVIPVDGKEGPADVCVIELGGTVGDIESMPFIEALRQLSFVVGSDNFCLIHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAEPLLDNTKDKLSQFCHVSIDNILNIHDVPNIWHIPLLLRNQNAHHSILKQLDLLSIAVPPDLRSWTKMAETYDNITDSVRIAMVGKYVGLQDSYLSVMKALLHACIACSLRPSIDWIAASDLEDDTAKSQPEAYADAWKTLRRAACVLVPGGFGDRGVRGMMLAARYARENNVPYLGICLGMQIAVIEYARSVLGWERANSVEFDAQTPNPVVIFMPEGSRTHMGSTMRLGSRRTLFQTPDCITSKLYHNSQYVDERHRHRYEVNPDVIGTLEEAGLNFVGRDESGKRMEILELPSHPFYVGVQFHPEFKSRPAKPSALFLGLILAATGKLEAHMSGYENGS 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0318 561 CDD GATase1_CTP_Synthase 298 543 IPR033828 GO:0003883|GO:0006241
Lele16g0318 561 PANTHER CTP SYNTHASE 1 554 IPR004468 GO:0003883|GO:0006221
Lele16g0318 561 FunFam CTP synthase 1 292 - -
Lele16g0318 561 Pfam CTP synthase N-terminus 2 272 IPR017456 GO:0003883|GO:0006221
Lele16g0318 561 CDD CTPS_N 2 268 IPR017456 GO:0003883|GO:0006221
Lele16g0318 561 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 299 552 - -
Lele16g0318 561 SUPERFAMILY Class I glutamine amidotransferase-like 297 547 IPR029062 -
Lele16g0318 561 Hamap CTP synthase [pyrG]. 1 550 IPR004468 GO:0003883|GO:0006221
Lele16g0318 561 Gene3D - 1 292 IPR027417 -
Lele16g0318 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 272 IPR027417 -
Lele16g0318 561 Gene3D - 295 558 IPR029062 -
Lele16g0318 561 Pfam Glutamine amidotransferase class-I 309 543 IPR017926 -
Lele16g0318 561 TIGRFAM PyrG: CTP synthase 1 544 IPR004468 GO:0003883|GO:0006221
Lele16g0318 561 FunFam CTP synthase 295 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0318 Lele-ChrLele16 1783826 1789731 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0318 16 1783826 1789731 Lele05g0364 05 2083430 2084533 CCT
Lele16g0318 16 1783826 1789731 Lele06g0182 06 1113656 1114759 CCT
Lele16g0318 16 1783826 1789731 Lele07g0383 07 2160840 2161943 CCT
Lele16g0318 16 1783826 1789731 Lele08g0189 08 1151217 1152320 CCT
Lele13g2104 13 27923322 27929189 Lele16g0318 16 1783826 1789731 hybridization
Lele14g2030 14 26258978 26264881 Lele16g0318 16 1783826 1789731 hybridization