Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0308 ATGAAGTACGTGTTGATCACCGGGGGAGTTGTGAGTGGCCTGGGCAAAGGCGTGACGGCGAGCAGCATAGGGGTCGTGCTCAAGGCCTGCGGTCTTTGTGTCACTTCCATCAAAATTGGTTCTCTGCCTCCTTCCTCTTCTCGTTATTTATTGTTCTGCCATTTCTTGCCATACGGTTCTTTCGTTTTGAATCATTGCCTTCATTGGGATATATGGGCAAATCAAATAATTTTCAACTTCCTTATGCGTCTGGTCTCTGTACTATTTGCAGATCCATACCTGAATATAGATGCTGGTACCATGTCTCCTTTTGAACATGGGGAAGTTTTTGTTCTTGACGATGGTGGAGAGGTTGATCTGGATTTGGGAAATTATGAGCGCTTCCTAGATGTCACACTTACAAAGAATAACAATATCACCACTGGAAAAATATACCAGGTGGTACCACACATCACAGATGCCGTTAAAGATTGGATTGAATCAGTTGCTGTGATTCCTGTGGATGGGAAGGAAGGGCTAGCAGATGTTTGTGTGATTGAGCTTGGAGGCACTGTGGGTGACATTGAATCTATGCCATTTATTGAGGCTTTACGGCAATTGTCCTTTTCTGTTGGGTCCGACAACTTCTGTCTCATCCATGTTAGCCTAATACCAGTGTTGGGTGTTGTGGGAGAGCAACATGCCGATCTGCTGAGAAGAACTGGTGTGGAGTCTTTTGTGCTTTCGAACTGCATCCTTCAGTTTGACAATTATGTCTCTAACAACCAAAATGCGCACCATTCAATTCTGAAGCAGCTTGACCTACTCAGCATTGCTATGCCTCCTGACTTAAGGAATTGGACGAAGATGGCTGAGACTTATGACAACATTACTGATTCTGTGAGAATTGCAGTGGTGGGGAAATATGTTGGCCTACAAGATTCATATTTATCTGTCATGAAGGCTCTTCTGCATGCTTGCATTGCATGCTCATTGAGGCCGTCAATTGACTGGATTGCAGCTTCTGACCTTGAAGATGATACTGCAAAATTGGTAGTGATTTCTTTCAAATTGCATCTGAAGATATTTGCATATGCTGATGCATGGAAGACTCTGAGGAGAGCAGCTTGTGTCTTGGTTCCTGGTGGATTTGGAGATCGTGGTGTGAGGGGTATGATGCTAGCTGCCAAATATGCCAGAGAGAACAATGTTCCATATCTGGGAATTTGCTTGGGAATGCAGATTGCTGTGATTGAGTATGCAAGATCGGTTCTGGGTTGGGAAAGGGCAAACAGTGTAGAGTTTGATGCCCAAACGCCAAATCCTGTTGTGATTTTCATGCCTGAGGTAAACCCAGATGTTATTGGAACACTAGAAGAAGCTGGGCTAAAATTTGTTGGAAGAGATGAAAGTGGAAAGCGTATGGAAATCCTAGAGCTTCCAAGTCATCCATTCTACGTAGGCGTGCAATTTCATCCTGAATTTAAATCACGGCCTGCTAAACCCTCTGCTTTATTTCTAGGTCTGATTTTGGCGGCAATGGGGAAGTTGGAAGCCCACATCAGTGGTTATGAAAATGGAAGTGCCAAAGTATCTGATATACTTTCCTTGTTTGCTGCATTATCGAGAAATCTGTCTTTGGAGCTCCATCTGCTGGTAGAATTTAGCAATGAACTCATCGGCTCGCGCGTCAATCCCTTGGCCGTCGTCTTCTTCTTCTTCACATTGTTGATGGCGGTATCGTTCATCGCCATCTTCGCCGTTATCATAGCGGAGATCATCGTCTCCGCCATATTCAAAATCAACATGTGGATTGATACAAGGGATGTGAGGCAAATGGAAGTGCATGGAGGAGGGACGATTGAACATAGGGGTCTCATCGAAGGAGAGCTCGCGTTCGCCGTAATAGATATGGCTGGGCGGTGTGGCGTGGGTGAGGCGTCTCAAGTACTTGGCAAGAAGACGCATCTCCGACACAAGCCTGCGCCTGAAGACGCCACCTTTGCGAGCCCAGAGCAGAGCCAACCGCAATATCTTCCATGCTCTATCAGCACCGTGACGGCTCTCAATGCCCATTATGAAAATGTGGAAATCAAAATCTGA 2082 0.4549 MKYVLITGGVVSGLGKGVTASSIGVVLKACGLCVTSIKIGSLPPSSSRYLLFCHFLPYGSFVLNHCLHWDIWANQIIFNFLMRLVSVLFADPYLNIDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVTLTKNNNITTGKIYQVVPHITDAVKDWIESVAVIPVDGKEGLADVCVIELGGTVGDIESMPFIEALRQLSFSVGSDNFCLIHVSLIPVLGVVGEQHADLLRRTGVESFVLSNCILQFDNYVSNNQNAHHSILKQLDLLSIAMPPDLRNWTKMAETYDNITDSVRIAVVGKYVGLQDSYLSVMKALLHACIACSLRPSIDWIAASDLEDDTAKLVVISFKLHLKIFAYADAWKTLRRAACVLVPGGFGDRGVRGMMLAAKYARENNVPYLGICLGMQIAVIEYARSVLGWERANSVEFDAQTPNPVVIFMPEVNPDVIGTLEEAGLKFVGRDESGKRMEILELPSHPFYVGVQFHPEFKSRPAKPSALFLGLILAAMGKLEAHISGYENGSAKVSDILSLFAALSRNLSLELHLLVEFSNELIGSRVNPLAVVFFFFTLLMAVSFIAIFAVIIAEIIVSAIFKINMWIDTRDVRQMEVHGGGTIEHRGLIEGELAFAVIDMAGRCGVGEASQVLGKKTHLRHKPAPEDATFASPEQSQPQYLPCSISTVTALNAHYENVEIKI 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0308 693 Gene3D - 444 518 IPR029062 -
Lele15g0308 693 Pfam CTP synthase N-terminus 2 39 IPR017456 GO:0003883|GO:0006221
Lele15g0308 693 Pfam CTP synthase N-terminus 85 228 IPR017456 GO:0003883|GO:0006221
Lele15g0308 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 237 IPR027417 -
Lele15g0308 693 Gene3D - 291 443 IPR029062 -
Lele15g0308 693 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 331 512 - -
Lele15g0308 693 Pfam Glutamine amidotransferase class-I 305 503 IPR017926 -
Lele15g0308 693 CDD GATase1_CTP_Synthase 294 503 IPR033828 GO:0003883|GO:0006241
Lele15g0308 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 40 IPR027417 -
Lele15g0308 693 PANTHER CTP SYNTHASE 442 514 IPR004468 GO:0003883|GO:0006221
Lele15g0308 693 SUPERFAMILY Class I glutamine amidotransferase-like 293 508 IPR029062 -
Lele15g0308 693 Gene3D - 1 237 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0308 Lele-ChrLele15 1735339 1742219 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0308 15 1735339 1742219 Lele05g0364 05 2083430 2084533 CCT
Lele15g0308 15 1735339 1742219 Lele06g0182 06 1113656 1114759 CCT
Lele15g0308 15 1735339 1742219 Lele07g0383 07 2160840 2161943 CCT
Lele15g0308 15 1735339 1742219 Lele08g0189 08 1151217 1152320 CCT
Lele13g2104 13 27923322 27929189 Lele15g0308 15 1735339 1742219 hybridization
Lele14g2030 14 26258978 26264881 Lele15g0308 15 1735339 1742219 hybridization