Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g1714 ATGCGGCGTTTTCTTTCGGTGTTATTGGCCTTTGCCTCCTTATTGTTGCCGGTATCGGTAGTATACAGCGGATTACCGAGGACGATGAGTTTTCTGCCTCTTGAACGGGCTATTCCTCTAGGCCATCCGGTGGAACTTGAAGTACTCAGAGCACGTGACAGAGCCAGGCAAGCTCGAATCTTGAAAGCATTTATTGGTCTTTATGTTGCATTGACATCTTTTCGTTCTCCAATTGGCGGCGGAAAATGCTGCGAACGACAACAAGAAATGAAAAGATGGAGATCGAATATGCTGTACTTTACGAAGGTGAAGCTGGGCTCTCCTCCAAGAGAATTCAGAGTCCAGATTGACACTGGAAGTGACCTATTGTGGGTTTCTTGCAATGCTTGCAGTGATTGCCCTCGATCTAGTGACCTGGGGATTGAGCTCAATTTCTTTGATACAGCCGGCTCATCCACGGCCACGCCAGTTTCCTGCTCAGATCGAATATGTACTTCTGCTTTACGAAGTACTGGAACTGAATGCTCCCCGCAGATTAGTCAGTGCAGCTACACTTTCCAGTATGGAGATGGAAGTGGGACATCAGGTTATTACGTATCTGATCTGATGCATTTTGACATGATGCTGGGACAATCTATGCTTGCAAACTCTTCCGCCAATGTTGTTTTCGGGTGTAGCACCTATCAATCTGGAGAATTGACAAAGACGGATAAAGCAGTTGATGGAATTTTTGGGTTTGGTCCTGGTGCTTTATCTGTTATCTCACAATTGTCATCACGAGGCATGACACCCGGGGTCTTCTCTCATTGCCTAAAAGGAGAAGGCAATGGAGGAGGCATTTTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGCCCACTAGTCCCATCACAGCCCCATTACAACTTAAATCTTCTGAGCATTGCTGTTAATGGACAACCCCTCCCAATTGATTCGGCTGTGTTTGCAATATTTAACAACCAAGGAACTATAGTTGACTCTGGTACAACATTGGCATACTTTGTTCAAGAAGCATATGATCCTATTATTAATGCTATCACTACTGCTGTGTCACAATCAGCGAATCCCGTTATTTCAAAAGGAAACCAATGTTATCTGGTCTCAAGCAGCATAGGTGACATATTTCCTCCAGTGAGTTTAAATTTTGCAGGCGGGGCTTCCATGGTTATAAAACCTGAACAGTACCTTATTCGTTATGGTTTCCTCGATGATTCTATAATGTGGTGCATTGGTTTCCAGAAGGCACAAGAAGGGGTTACAATTTTAGGAGATATTGTCCTAAAAGATAAAATTTTTGTCTATGACTTAGCTCATCAACGAATTGGGTGGACTAACTATGACTGTTCCTTGTCTGTAAATGTCTCCCTGACCACGAGCAAGGATGAGTACATCAATGCAAGAAAGCGGAGTGCAAGTAGCTCACAGATCGATACTCTCACCAATTTGCTACCCGTTAGCATCAGCACTCTCATAGTGTACATATTAGTTTTCATGGAGTACTTATAG 1533 0.4351 MRRFLSVLLAFASLLLPVSVVYSGLPRTMSFLPLERAIPLGHPVELEVLRARDRARQARILKAFIGLYVALTSFRSPIGGGKCCERQQEMKRWRSNMLYFTKVKLGSPPREFRVQIDTGSDLLWVSCNACSDCPRSSDLGIELNFFDTAGSSTATPVSCSDRICTSALRSTGTECSPQISQCSYTFQYGDGSGTSGYYVSDLMHFDMMLGQSMLANSSANVVFGCSTYQSGELTKTDKAVDGIFGFGPGALSVISQLSSRGMTPGVFSHCLKGEGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLLSIAVNGQPLPIDSAVFAIFNNQGTIVDSGTTLAYFVQEAYDPIINAITTAVSQSANPVISKGNQCYLVSSSIGDIFPPVSLNFAGGASMVIKPEQYLIRYGFLDDSIMWCIGFQKAQEGVTILGDIVLKDKIFVYDLAHQRIGWTNYDCSLSVNVSLTTSKDEYINARKRSASSSQIDTLTNLLPVSISTLIVYILVFMEYL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g1714 510 Gene3D Acid Proteases 286 463 IPR021109 -
Lele13g1714 510 ProSiteProfiles Peptidase family A1 domain profile. 99 453 IPR033121 -
Lele13g1714 510 Gene3D Acid Proteases 86 285 IPR021109 -
Lele13g1714 510 CDD pepsin_A_like_plant 99 457 IPR034161 -
Lele13g1714 510 FunFam Aspartic proteinase-like protein 2 286 464 - -
Lele13g1714 510 PRINTS Pepsin (A1) aspartic protease family signature 105 125 IPR001461 GO:0004190|GO:0006508
Lele13g1714 510 PRINTS Pepsin (A1) aspartic protease family signature 332 343 IPR001461 GO:0004190|GO:0006508
Lele13g1714 510 PRINTS Pepsin (A1) aspartic protease family signature 429 444 IPR001461 GO:0004190|GO:0006508
Lele13g1714 510 PANTHER ASPARTYL PROTEASES 32 451 IPR001461 GO:0004190|GO:0006508
Lele13g1714 510 Pfam Xylanase inhibitor C-terminal 302 453 IPR032799 -
Lele13g1714 510 Pfam Xylanase inhibitor N-terminal 99 284 IPR032861 -
Lele13g1714 510 SUPERFAMILY Acid proteases 92 460 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g1714 Lele-ChrLele13 25666901 25671060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele13g1714 99 458 Miscellaneous Gene Families AT1G44130 29.024 9.74e-44 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g1002 06 6217264 6217773 Lele13g1714 13 25666901 25671060 CCT
Lele07g1185 07 7143484 7144584 Lele13g1714 13 25666901 25671060 CCT
Lele05g1137 05 7100955 7105378 Lele13g1714 13 25666901 25671060 CCT
Lele13g1714 13 25666901 25671060 Lele16g0705 16 3972280 3976150 hybridization