Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0572 ATGGCTGGTCGAGGAAAAACCTTAGGAGCTGGGTCTGCCAAGAAGGCTACTTCTCGTAGCAGCAAAGCGGGTCTGCAATTCCCTGTCGGTCGTATTGCTCGGTATTTGAAGGCCGGGAAGTATGCGGAGCGTGTCGGTGCCGGAGCCCCCGTTTACCTGGCTGCCGTTCTTGAATATCTCGCCGCTGAGGTTCTTGAGTTGGCTGGAAACGCTGCAAGAGATAACAAGAAAACTCGTATTGTGCCTCGACACATTCAATTGGCGGTTAGGAACGATGAAGAGCTTAGCAAGCTTTTGGGCGATGTGACCATTGCGAATGGTGGTGTTATGCCTAACATTCACAACTTGCTACTTCCCAAGAAGACAGTCAATAGAGCTATTGCCATCCATTTTCAGAAGCATGGAAGGGCAGAAACGAGTCAGAAGTGTCACTTAGATGAAATGGATGCTAATCAAATGAGTTAA 465 0.4882 MAGRGKTLGAGSAKKATSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTVNRAIAIHFQKHGRAETSQKCHLDEMDANQMS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0572 154 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele12g0572 154 PRINTS Histone H2A signature 73 87 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele12g0572 154 PRINTS Histone H2A signature 44 59 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele12g0572 154 PRINTS Histone H2A signature 101 119 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele12g0572 154 PRINTS Histone H2A signature 15 37 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele12g0572 154 PRINTS Histone H2A signature 59 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele12g0572 154 Pfam C-terminus of histone H2A 93 123 IPR032454 -
Lele12g0572 154 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Lele12g0572 154 SUPERFAMILY Histone-fold 11 126 IPR009072 GO:0046982
Lele12g0572 154 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele12g0572 154 Gene3D Histone, subunit A 1 128 IPR009072 GO:0046982
Lele12g0572 154 FunFam Histone H2A 1 128 - -
Lele12g0572 154 Pfam Core histone H2A/H2B/H3/H4 12 90 IPR007125 GO:0003677
Lele12g0572 154 PANTHER HISTONE H2A 12 122 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0572 Lele-ChrLele12 14164310 14165349 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0572 12 14164310 14165349 Lele12g0572 12 14164310 14165349 ECH
Lele09g0763 09 6006202 6006833 Lele12g0572 12 14164310 14165349 hybridization
Lele10g0693 10 5237257 5237905 Lele12g0572 12 14164310 14165349 hybridization