Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0272 ATGTTTAAGCGCCACTACTGCCACGACGATGATTACCGCCGGTGGCTCATCCGCCGCATACTCCTCGCAATCTTGGCCTTGGCCGGCCTCATCCTCTTCATCATCCTCTTAATGTGGATCATCTTGAGACCCACCAAACCCCGTTTCACCCTCCAGGACGCCGCCCTTTACACCTTCAACCTCTCCTCCTCCACCACCGCCGAACAACCTTTTTCCGCCCTTAACCTCACCATGCAAGCCACTTTCTCTGCTCACAACCCCAACGACAGAATCGGCATTTTTTATCGCTCCCTCGATGTCTACATCTCCTACCGTGAGCAACAGGTGTCACGGATCGTGAGCCTCCCTCCTTCATACCAACACAATGACGATATTACCGTCTGGTCGCTCTACTTGTACGGCATCGCCGTGCCGGTGTCGACATACACGGTGGACGCTCTGAGTGAGGATCGGAATACTGGGGCGGTGATGCTCAAGGTGGTGATCGAAGGAGACGTTAAATGGAAGGTGGGTTCGTGGGTTTCCGGGACGTACCACCTCCAAGTCAACTGTCCGGCTTATATCAGTCTCGCCGGTGCCCACATCAGCAGGATACAAAGTTGCGGTGTTGATGTTTAA 618 0.5421 MFKRHYCHDDDYRRWLIRRILLAILALAGLILFIILLMWIILRPTKPRFTLQDAALYTFNLSSSTTAEQPFSALNLTMQATFSAHNPNDRIGIFYRSLDVYISYREQQVSRIVSLPPSYQHNDDITVWSLYLYGIAVPVSTYTVDALSEDRNTGAVMLKVVIEGDVKWKVGSWVSGTYHLQVNCPAYISLAGAHISRIQSCGVDV 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0272 205 PANTHER OS05G0367900 PROTEIN 18 189 IPR044839 GO:0098542
Lele12g0272 205 Pfam Late embryogenesis abundant protein 82 184 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0272 Lele-ChrLele12 2348304 2348921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0272 5 201 EF-hand Containing Proteins AT5G21130 22.222 1.29e-09 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0384 29 2331439 2332122 Lele12g0272 12 2348304 2348921 CCT
Lele30g1026 30 13642933 13643955 Lele12g0272 12 2348304 2348921 CCT