Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele10g0579 ATGAGAAACATTTCAAAACCAGCGTGCTACATCTTCGTTCTTCTTCTAGTAGCAGTTCTTGAGGATGAAGGCCGTTATCTGCAAACCAGAACTTCTGCATTGTTGACTTCAGATGGAGTTGACGAGGAGGATGGTGTTAAACCCCAAAAGATTTCTCACTTTTCTTACTGTTCCATGGAGAATCATACTTGGCTCCTGGGGGTAAGCAAATCTTCAAGATTCTTGGCCCTGGGCTTTGGTGCAAGTGCCTTTGATCTTCTTGGTGCCCTTCCTGAGTCTCTGATTCTTCTCGTAAAGAACTATACGGTTGATATGTGGAAAACTATTATATCTTCTGAACTATTAACAACTCAAGAGAAGGTGATTCCCAGTGTGTTTAGATTCTCTTCAGTGCTTCGCTCTGTGACCTTGATGATTGCTCTTGCCGTTACTGTCATTTTTGTCCTCTCATATTTCATTTATCAGGGTTTTCTCAAGCCATGGATGGAACACATGAGAAAAGAACGTGAGATGAAGGGACATCTTGTATCTGAAATCTCAAGGCATGCTCAGAGTGGTGCGGTGGTTGGGCAGCTTCTCCATGATGATGGAACCGAGGATGAGTCTGCTATAAGAAGGTTGTTTGAGGAAGTTGATGGCAATAGAGATAATTGTGTTTCTCAATCCGAGTTAAGGAAACTAGTGACCAACATACACTTTGGTGAGGGAGTGAATGAGGAGGAAGCAGTCAAGAAAATAATTCAAGATTTTGATATAAACAGTGACAATGTGATTACTGAGGAGGAATTTGTGGATGGAATCACAAAATGGGTGCTTTCATCTTCCAGACAATCTCCACACTCAAAACCTCTGCATCATGAAGAAGAAAATCATCAAACTTGGGAATATGTAGAGAAGGTGTTGGAAGAGAAGCATCAGCACAAAGGAATACATGGATGGATGATGCCTATAATAAATGCGGTTTTAGGAATCACTATATTATCTATTCTTGCAGAGCCATTAGTAGACAGTGTCCAGGCATTTTCTGCAGAAGCAGGAATCCCATCTCTCTTTGCCTCTTTCATTTTAGTTCCTCTGGCCACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCACAAGAAGCAAAGTAACACTTCTACACAATCTATGAGGTTCCGTTTGGTTCTCAACTTTGATAGATTCCTGGTATGCATCGCATTTTCTGTGCTTGAAGCTGGTTTAAACGAAGTTTTTCTGTCGTTCATCTGGGCAACAACAACCAAGAAGCAAATCGTGAGAACCATTATGAGAGATTCATGTTTCGTTTTATTCATTCTTTTTGCAATAGTGATTGTGGTTGAAGGGCGTCGTCTGAACTCAAGAGCTTTTCATAATGGATTGGTTTCAGATGGAGTTTATGATGATGATGAACTTCAACACAACAAAACTTCTTACTTACTTTTGAAAAGCATTGAATCTGAACCCTATTCTCCAGAAGAGTGCAAGCAAATGTATGGGTTCTTGCCTTGTTCAAATAATATTTTTGGCCATCTGTTTCTGATTTTGGTTTATGAGTACTTGTTGTTCCATGGAGAATCGTATTTGGTTGATGGAGGTGAGCAGATCTTCAAGATTCTTGGTCCTGGGATTTTCGGTGCAAGTGCCTTTCACATCCTTAGTGCCCTTCCTGAGTCCTTAATTCTTCTTGTTTCTGGACTTCTCAGCAGTAAGGAGATTGCACAAGAGTATGCTTTTACTGGAGTTGGCTTATTAGCTGGATCATCCATCTTGCTCTTGACAGTAGTTTGGGGAACCTGTGTTATAACTGGGGCCCAACAATTTAACGATTATTCAAGTCCTAGAATCTGTCATGGTTCTAATTCAGTAACTACAAAACTAAAATCATACTTGACTGGTTATGGCATTACTACAGATTTGGAGACCAGCTACACTGCAAGAATCATGCTTGTCTCTGTCATACCACTCATAATAATGCAAATCCCTAACTTATTTCAATTCTCTTCTGGGCCAAGAACTGTGACTTTGATAATTGCTCTTATCATCACTGCCATTTTTCTGCTCTTGTACTTCACTTACCAGATTTTTGAACCTTGGGTACAGAAAAGAAGATTGGAATATGTGAAAAGAAATCATTTACTAGTAAGAATATTACGACATGTTGAGAAGAGTACCCTGGAGAGGATCCTCACCAAGAATGGATCTCCAAATAAAAGTGCCATAAGAAGGCTATTTAAAGAAGTGGATCAAAATGAAGACAGTGTTGTATCAGCTTTTGAAGTAAAACGGATCCTGCAAAAGAGCAAATCAAGTGAAAGAAGTATCAGTGAAGAGGAAATAGAAGACATGTTAAGAATCTTTAACTTGGATGATGATGACAATAGAATAACTAAAGATGAATTTGTAAGTGGCTTAATAAAATGGCTTGAACAAACCAAGTTTGCTATGAATAAACAGTATATGTCAAGGAAATCACTCAAGGAGTTATATCAGGTTTTTGAGCCATGGATTGAGAACAAAAGGAGAGAACAAGAAACAAAGAAACATATCATATCTGAAATCTTTAGGCATATTCAGAGCGATTTGGTTGTCAACCTTGTCACTGAAGATGGCAAACCTGATGAACTTGCTATCAGAAGGTTATTCGACAAGATGGATACCAATAAAGATAACTGCATTTCCCGGTCTGAGTTAAGAAAACTGCTCAAGGAGATCAATATTGCTAAAGCATCAATAGATGTGGAGGAAGCAGCTAATAAATTCATTGAAGAACTTGACGTTAACAGAGACCTTGTCATTAGTGAGGAGGAATTTATTTCTGGGCTAAAAAAATGGCTCAGCTCATCATCTTCCAGTCCTGCTCTTGTCTCAGACTCTGAGTCTGAAGAAGACATACTTCAGATGTGGGAAGAGACAGACATGGTGGTGGAAGAGAATCAAAGCAAAGCAGTGGTTGATAAATCGGTATGGGCATGGCTGAAGGCAATAATATATGTGTTGGTGGGGATTGCTATGTTATCTGTTCTTGCAGAGCCATTGATAGAAAGTGTACGCAGGTTTTCAAACAGTGCAGGAATTAATGCATTCTTCATCTCATTTATGTTGGTCCCATTGGCTACAAATGCTAAAAAGGCAATTTCTGCAGTCAAAGAAGCAAGCCATAAGAAGTCCAGAACTACTTCTCTTTCCATTTCTGAGATGTATGGAGGGGTGTTCATGAACAATGTGCTAGGGTTCTTTGCGATTTCAGTTCTGATATGTGCTAGAGGAATCACATGGGAATTCTCAGCTGAAGCACTGGTTGTGGCTCTGGTTTGTCTTCTGGCTGGCCTTTCTGCTAGTTTTAATTCCACTTTTCCTATATGGCATTCCTTATGTGCATACCTCTTGTATCCATTCTCTCTTGTCCTTGTTTTTCTCCTCAAACATGTTCTCAGCTATATTTAA 3453 0.3942 MRNISKPACYIFVLLLVAVLEDEGRYLQTRTSALLTSDGVDEEDGVKPQKISHFSYCSMENHTWLLGVSKSSRFLALGFGASAFDLLGALPESLILLVKNYTVDMWKTIISSELLTTQEKVIPSVFRFSSVLRSVTLMIALAVTVIFVLSYFIYQGFLKPWMEHMRKEREMKGHLVSEISRHAQSGAVVGQLLHDDGTEDESAIRRLFEEVDGNRDNCVSQSELRKLVTNIHFGEGVNEEEAVKKIIQDFDINSDNVITEEEFVDGITKWVLSSSRQSPHSKPLHHEEENHQTWEYVEKVLEEKHQHKGIHGWMMPIINAVLGITILSILAEPLVDSVQAFSAEAGIPSLFASFILVPLATNFREATSAIKEASHKKQSNTSTQSMRFRLVLNFDRFLVCIAFSVLEAGLNEVFLSFIWATTTKKQIVRTIMRDSCFVLFILFAIVIVVEGRRLNSRAFHNGLVSDGVYDDDELQHNKTSYLLLKSIESEPYSPEECKQMYGFLPCSNNIFGHLFLILVYEYLLFHGESYLVDGGEQIFKILGPGIFGASAFHILSALPESLILLVSGLLSSKEIAQEYAFTGVGLLAGSSILLLTVVWGTCVITGAQQFNDYSSPRICHGSNSVTTKLKSYLTGYGITTDLETSYTARIMLVSVIPLIIMQIPNLFQFSSGPRTVTLIIALIITAIFLLLYFTYQIFEPWVQKRRLEYVKRNHLLVRILRHVEKSTLERILTKNGSPNKSAIRRLFKEVDQNEDSVVSAFEVKRILQKSKSSERSISEEEIEDMLRIFNLDDDDNRITKDEFVSGLIKWLEQTKFAMNKQYMSRKSLKELYQVFEPWIENKRREQETKKHIISEIFRHIQSDLVVNLVTEDGKPDELAIRRLFDKMDTNKDNCISRSELRKLLKEINIAKASIDVEEAANKFIEELDVNRDLVISEEEFISGLKKWLSSSSSSPALVSDSESEEDILQMWEETDMVVEENQSKAVVDKSVWAWLKAIIYVLVGIAMLSVLAEPLIESVRRFSNSAGINAFFISFMLVPLATNAKKAISAVKEASHKKSRTTSLSISEMYGGVFMNNVLGFFAISVLICARGITWEFSAEALVVALVCLLAGLSASFNSTFPIWHSLCAYLLYPFSLVLVFLLKHVLSYI 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele10g0579 1150 ProSiteProfiles EF-hand calcium-binding domain profile. 915 950 IPR002048 GO:0005509
Lele10g0579 1150 Pfam EF-hand domain pair 202 265 IPR002048 GO:0005509
Lele10g0579 1150 Pfam EF-hand domain pair 879 942 IPR002048 GO:0005509
Lele10g0579 1150 Pfam EF-hand domain pair 741 804 IPR002048 GO:0005509
Lele10g0579 1150 Pfam Sodium/calcium exchanger protein 998 1141 IPR004837 GO:0016020|GO:0055085
Lele10g0579 1150 Gene3D - 720 806 - -
Lele10g0579 1150 CDD EFh 204 268 IPR002048 GO:0005509
Lele10g0579 1150 ProSiteProfiles EF-hand calcium-binding domain profile. 875 910 IPR002048 GO:0005509
Lele10g0579 1150 CDD EFh 880 945 IPR002048 GO:0005509
Lele10g0579 1150 ProSiteProfiles EF-hand calcium-binding domain profile. 738 773 IPR002048 GO:0005509
Lele10g0579 1150 ProSitePatterns EF-hand calcium-binding domain. 888 900 IPR018247 -
Lele10g0579 1150 ProSitePatterns EF-hand calcium-binding domain. 251 263 IPR018247 -
Lele10g0579 1150 SUPERFAMILY EF-hand 200 272 IPR011992 -
Lele10g0579 1150 Gene3D - 153 281 - -
Lele10g0579 1150 SUPERFAMILY EF-hand 741 950 IPR011992 -
Lele10g0579 1150 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 108 381 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele10g0579 1150 Coils Coil 900 920 - -
Lele10g0579 1150 Gene3D - 807 955 - -
Lele10g0579 1150 ProSiteProfiles EF-hand calcium-binding domain profile. 199 234 IPR002048 GO:0005509
Lele10g0579 1150 SMART efh_1 879 907 IPR002048 GO:0005509
Lele10g0579 1150 SMART efh_1 742 770 IPR002048 GO:0005509
Lele10g0579 1150 SMART efh_1 203 231 IPR002048 GO:0005509
Lele10g0579 1150 SMART efh_1 242 270 IPR002048 GO:0005509
Lele10g0579 1150 SMART efh_1 919 947 IPR002048 GO:0005509
Lele10g0579 1150 ProSiteProfiles EF-hand calcium-binding domain profile. 238 273 IPR002048 GO:0005509
Lele10g0579 1150 ProSitePatterns EF-hand calcium-binding domain. 212 224 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele10g0579 Lele-ChrLele10 4264512 4275569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele10g0579 463 814 EF-hand Containing Proteins AT1G53210 38.251 1.36e-75 259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele10g0579 10 4264512 4275569 Lele10g0579 10 4264512 4275569 ECH
Lele10g0579 10 4264512 4275569 Lele11g0640 11 6196986 6200895 hybridization