Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele09g0629 ATGCCTCTTCCTACCCGTTTTACCCTCTTCTTTGCAATCCTACTCATCTGCGGTCACGCTCATGGCCGCCGCGTCATCCGCCTTCCATCTGATCCGATCTCAGATGGAGTCTCTGATGATCTGCCGCAGAGCAAGCAAATAGTGCTACCCCGGGCGTTTCAGTTTCTGACGGAGTCCACCTGTGAGCAGACGTATGGGTTCTTACCCTGCACCACTACTGTGCTTGGAAACTTGTTCCTTATCATCATCTATGGCTTTCTCATGTACAAGGCAGCTACTTACTTGTCCGGTGGGAGTGAGCTCTTGCTTGAGATCTTAGGCCCTGGTATAGTTGGTGGCTTGTTCCTTCCCATGCTTGGTGCTCTTCCGGATGCCATGCTTATACTTGTATCCGGGATTTCTGGTAGTAAAGAAACTGCTCAAAGTCAGGTCTATGTTGGGATGGGCTTGCTAGCTGGGTCAACAGTTCTGCTTCTGACTATTATATGGGGAACCTGCGTAATTGTTGGGAAGTGCGACCTTGTGGATTCAAAAGCAATAGATTCACAAGACACGAGGGGGTTTAGCTTAACCGGTTCTGGTGTTAGTACAGATATTTGGACAAGTTATGCAGCAATGATTATGGCCATATCCGTCCTCCCATTTCTTATTGTTCAGTTGCCACAAATTCTTAATTCAACTTCAGGAAGGCACCTGGCTGTTTTGATTGCACTCATTGTCTCTGTGTCTATGTTGATTGCTTATTGCCTTTACCAGATTTTCCAGCCTTGGATACAAAAGAGAAAACTTGATTATGTGAAACACAAGCACGTTATTTTAGGCCTTTTGAGACACTTAAAGCAGCATTCATTGGGAAGGTTACTGAGAGATGACGGTGAACCTGCTGAAGATATTATAAGAAAGTTATTTGAGAGAATTGATGAGAACGATGATAACCACCTTTCTTACGGTGAACTAAGAGCACTAATTATTGGAATTGAATTTGAGGAGATTGACCTGGATCATGATGATGCTGTAAAAAGAATAATGGAGGATTTTGATACTTCTCGTGATTCACTTCTTGATGTAAATGAATTTGTAAATGGTATATGTAGATGGCTTCGAAGGGCTACACGTTCTCAGGCTGCTTCTGGGGATGCTGGTCCACACACAGTAAAGTTCTTAAGCGATTTTCACCAAGAAACAGAAAGGGAACGTGATCTATTGCATGTGGGGAATCATAGCGAAACAGTTGAAGAGGGTGCAACTGATACTAAATGGAATGTTGTCAAAGCAGTGCTGCTGCTGCTTCTTGGGACTATCATAGCAGCTGTATTTGCTGATCCTTTGGTTGATGCAGTTGATAACTTTTCTGATGCCACAAGCATTCCTGCTTTCTTCATCTCCTTCATTGCGTTGCCTTTGGCTACAAATTCAAGTGAAGCAGTGTCGGCAATCATTTTTGCTAGTCGTGATAAGAGGGAAACAGCCTCATTAACCTTCTCTGAGCTATTCGGGGCAGTGACAATGAACAATGTGCTGTGCCTTTCGGTGTTCTTGGCCCTTGTTTATGCAAGGGGATTGACATGGGACTTCTCTTCAGAAGTGCTGGTTATTGTCATAGTTTGCATTGTCATGGGTCTCTTTGCCAGCTTCCGCACCAGCTTCCCTCTCTGGACAGCTATAATGGCTATCCTACTGTACCCCTTTTCACTGGCTTTGGTCTATGTTCTTGATTATGTGTTTGGTTGGTCATAG 1737 0.4421 MPLPTRFTLFFAILLICGHAHGRRVIRLPSDPISDGVSDDLPQSKQIVLPRAFQFLTESTCEQTYGFLPCTTTVLGNLFLIIIYGFLMYKAATYLSGGSELLLEILGPGIVGGLFLPMLGALPDAMLILVSGISGSKETAQSQVYVGMGLLAGSTVLLLTIIWGTCVIVGKCDLVDSKAIDSQDTRGFSLTGSGVSTDIWTSYAAMIMAISVLPFLIVQLPQILNSTSGRHLAVLIALIVSVSMLIAYCLYQIFQPWIQKRKLDYVKHKHVILGLLRHLKQHSLGRLLRDDGEPAEDIIRKLFERIDENDDNHLSYGELRALIIGIEFEEIDLDHDDAVKRIMEDFDTSRDSLLDVNEFVNGICRWLRRATRSQAASGDAGPHTVKFLSDFHQETERERDLLHVGNHSETVEEGATDTKWNVVKAVLLLLLGTIIAAVFADPLVDAVDNFSDATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRETASLTFSELFGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVIVIVCIVMGLFASFRTSFPLWTAIMAILLYPFSLALVYVLDYVFGWS 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele09g0629 578 ProSiteProfiles EF-hand calcium-binding domain profile. 294 329 IPR002048 GO:0005509
Lele09g0629 578 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 49 570 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele09g0629 578 Gene3D - 242 377 - -
Lele09g0629 578 FunFam Sodium/calcium exchanger family protein / calcium-binding EF hand family protein 271 393 - -
Lele09g0629 578 SUPERFAMILY EF-hand 294 373 IPR011992 -
Lele09g0629 578 Pfam Sodium/calcium exchanger protein 79 255 IPR004837 GO:0016020|GO:0055085
Lele09g0629 578 Pfam Sodium/calcium exchanger protein 425 569 IPR004837 GO:0016020|GO:0055085
Lele09g0629 578 CDD EFh 299 363 IPR002048 GO:0005509
Lele09g0629 578 ProSiteProfiles EF-hand calcium-binding domain profile. 334 369 IPR002048 GO:0005509
Lele09g0629 578 FunFam Sodium/calcium exchanger NCL2 414 571 - -
Lele09g0629 578 Pfam EF-hand domain pair 299 361 IPR002048 GO:0005509
Lele09g0629 578 ProSitePatterns EF-hand calcium-binding domain. 307 319 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele09g0629 Lele-ChrLele09 4804010 4807940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele09g0629 20 578 EF-hand Containing Proteins AT1G53210 67.549 0.0 739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele09g0629 09 4804010 4807940 Lele09g0629 09 4804010 4807940 ECH
Lele09g0629 09 4804010 4807940 Lele11g0640 11 6196986 6200895 hybridization