Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g2378 ATGGGTAAGGAAGTAGAAGCTCCTTTGCTTGTAAAGAGTGGTGAAGAAGAGAACATTGGTGTTGTGGTATCATCGGCTTCTGAAAATAGTACGTTTTGCCAAGAGTTGAAGACGGTAAGTTCCATGGCTGCTCCAATGGTGGCCGTTACCGTGTCTCAGTATCTTCTGCAAGTCGTGTCCATGATGATGGTCGGGCACATTGGGAAACTCGCCTTCTCCGGCGTCGCAATCGCCACTTCTTTTGCTGAAGTCACCGGCTTCAGTGTTCTTATAGGAATGGCTGGTGCATTGGAAACTCTATGTGGGCAAACTTATGGTGCAGAAGATTTCAAAAAGCTGGGGAACTATACATGCTGTGCAATATTCTCATTGATGTTTGTTTGTGTCCCTATATCTGTATTGTGGATATTCATGGATAAAATACTATTACTATTTGGCCAAGACCCTGAGATTTCTCACGTTGCTCGAGTATATTGCATATACCTCATCCCTGCGCTGTTTGGCTATGGTGTTCTTCAATCACTGGTTCGCTACTTCCAGACTCAGTGTATGATCTATCCCATGGTTTTGAGCTCAATTGCGGTTCTGTGTTTGCATGTTCCTGTGTGTTGGGTTCTAGTGTATGGATTGGGAATGGGACACGTTGGAGCGGCATTAGCCATTGGGATTTCGTATTGGTTGAATGTCATCGGGCTTGGACTTTATATGAAGTATTCTAAAGCATGTGAGAAAACACAGATTGTGTTCTCTAGTACTGCTTTACTAAACATTGCAGAGTTTCTCCAATTTGCTATCCCTTCTGGACTTATGGTTTGCTTTGAATGGTGGTCCTTTGAGTTACTCACCCTACTTGCCGGGCTTTTGCCTGATCCACAACTTGAAACCTCAATTCTATCTGTCTGCCTGAGCATTACAACATTGCACTACTTCGTTCCTTATGGTGTTGGAGCAGCTGCAAGTACTCGTGTTTCAAACGAACTAGGAGCAGGTAATCCCAGGAGAGCACGAAATGCTGTTCGCGTAGTTCTGGTGATTGGGATCGCTGAAGCAGTTGTCATTAGCACTGCCTTCTTCTTCTGCCGTCACATACTGGGATATGCTTACAGCAATGATCTAGAAGTGGTAAATTATGTTGCTGAAATGGTTCCTTTCCTTTGTCTATCTGTGAGTTCAGACAGTCTTGCAGGAATCCTATGTGGGATTGCAAGAGGTGGGGGATTCCAGCAAGTAGGAGCATATGTGAACCTTGGTGCGTATTATCTGATTGGAACTCCTATTTCTGTCTTACTGGGATTTGTACTTCATTGGAGAGCCAAGGGACTCTGGCTTGGAATCCTAGCAGGCACCACTGTTCAAGCAGTTGTGCTTGTTTTTGTAACATCCTTCACAGATTGGGAGAAAGAGGCAAGGAAAGCGAGGGAAAGAATACAAAAGGAGTCTTCAGACAAACCGAATAACGAATCTGTATGA 1470 0.4435 MGKEVEAPLLVKSGEEENIGVVVSSASENSTFCQELKTVSSMAAPMVAVTVSQYLLQVVSMMMVGHIGKLAFSGVAIATSFAEVTGFSVLIGMAGALETLCGQTYGAEDFKKLGNYTCCAIFSLMFVCVPISVLWIFMDKILLLFGQDPEISHVARVYCIYLIPALFGYGVLQSLVRYFQTQCMIYPMVLSSIAVLCLHVPVCWVLVYGLGMGHVGAALAIGISYWLNVIGLGLYMKYSKACEKTQIVFSSTALLNIAEFLQFAIPSGLMVCFEWWSFELLTLLAGLLPDPQLETSILSVCLSITTLHYFVPYGVGAAASTRVSNELGAGNPRRARNAVRVVLVIGIAEAVVISTAFFFCRHILGYAYSNDLEVVNYVAEMVPFLCLSVSSDSLAGILCGIARGGGFQQVGAYVNLGAYYLIGTPISVLLGFVLHWRAKGLWLGILAGTTVQAVVLVFVTSFTDWEKEARKARERIQKESSDKPNNESV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g2378 489 CDD MATE_eukaryotic 35 471 IPR045069 GO:0042910|GO:1990961
Lele08g2378 489 Pfam MatE 266 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele08g2378 489 Pfam MatE 45 205 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele08g2378 489 TIGRFAM matE: MATE efflux family protein 45 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele08g2378 489 Coils Coil 462 482 - -
Lele08g2378 489 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g2378 Lele-ChrLele08 29444317 29448413 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g2378 08 29444317 29448413 Lele08g2378 08 29444317 29448413 ECH
Lele05g2458 05 40287732 40291202 Lele08g2378 08 29444317 29448413 hybridization
Lele06g2440 06 32077148 32079038 Lele08g2378 08 29444317 29448413 hybridization