Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1675 ATGCTCTACTCCGCCACTTTTCAGGGCTTTATCAGAACCACCACTTCTGCTTCAACCACCATGTCCCTCAGGGGTCCCCTTTTCCTCTTACCCCACAGAGCTCGAAGGCTTTCACTTCTCTCCATTTCCTTGAGACATCCTTCCCTTGGCTTGAGGAATTTTCATGTGCCCTCAAAGATAAGGTCTGGCATAGGGCCGGTGCGCTCAGTGGCGCCTTCTAGGACGACTGAGGTGGATTTGAAGGAGAGGCAAGGTGTGGGCTTCAGGCGGAGGAGCATTGCTTTGCCGTTTTGGCATCAGCAGAGCTCCAGTTATGGTCGTTTTGCTTACCATGATGTGTCTAGTGATGATTCCGATATGGAATTGGGATCTCCTCAGCAGCAAATGGGTGGTTCATCCCTTGATAACATTGATGAGTGGAGATGGAAGCTGACCATGCTTCTTCGCAACAAAGATGAGCGAGAATTGATTTCAAGGGAGAAAAAGGACAGACGTGATTTTGAGCATCTCTCAGCTTTAGCAACTAGGATGGGTTTATATAGCCGACAGTACTCAAAACTAGTTGTCTTTAGCAAGGAACCTCTGCCAAATTACAGATCTGATCTGGATGATAGGCGTCCACAGAGAGAGGTTGTCATACCTTATCATGTTCATGGAGAAGTAAATTCTCTTCTCAATGCTCATCTTTCTAAAAAGTCTAAAAGCTTTGGAGGTGTTTTTGATACATCCTGTCATAGATCAAGCAGTGCTGGCATTCCTGCGGATGAAGGAATTCTCAAGGAGCCAGAGCCCTTTTCACAGAATAATGTTGTCAGAGAGAGAATCCTTCGACGAAAAAGTTTGCAACTGCGTTTTCAACAAGAAGAATGGCAGGAGTCTCCTGAAGGACAAAAGATGCTTGAATTTCGTAAAACTCTTCCTGCATTCAAGGCGAAGGATGCATTATTGAAAGCCATTTCAGAGAACCAGGTTGTTGTGGTATCAGGTGAAACTGGTTGCGGTAAGACCACACAACTTCCACAATATATATTAGAGTCTGAGATTGAAGCTGCACGAGGTGCTGTCTGTAGCATAATTTGTACTCAGCCTAGAAGAATATCTGCGATGTCTGTTTCTGAAAGAGTTGCAGCAGAGCGTGGGGAAAATTTGGGAGAATCTGTTGGTTACAAGGTTCGGCTGGAGGGTATGAAAGGAAGGGATACTCGTCTTCTTTTTTGCACTACAGGTGTATTGTTGAGGAGACTTCTTGTGGACAGAAATCTAAAAGGTGTCACTCATGTTGTTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTCCTTGTTGTCCTGAAGGATCTTCTTCCGCGCCGTCCAGACCTTAGGTTAATTTTGATGAGTGCAACCTTAAATGCTGAGCTATTTTCTTCCTACTTTGGTGGGGCTCCAACTTTACACATACCTGGTTTTACATATCCTGTTCGAGCACATTTTCTTGAGGATATTCTGGAAGTGACTCGATATCGGTTGACATCTTATAATCAAATTGATGATTATGGTCAAGAGAAGACATGGAAAATGCAGAAACAGGTTCAAGCTTTGAAAAAAAGGAAGACTGAGATTGCTTCGGTCGTTGAGGATGCACTTGAAGCTGCTGATTTCAAGGAGTACAGCTTATGCACCCGAGAGTCATTATCCTGCTGGAGTCCCGATTCAATTGGTTTTAATCTTATTGAACATATTCTTTGCCACATTATCAAGAATGGAAGGCCAGGTTCTATTTTGGTTTTTATGACTGGTTGGGATGACATAAATTCTTTAAAGGATCAGCTCCAAGCTCATCCTCTATTGGGCGATCCAAGCAAAGTATTGCTTCTTGCATGCCATGGCTCCATGGACAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGAGTGAGGAAAATAGTTCTTGCCACTAATATGGCCGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGATTGATTGTGGGAAAGCAAAAGAGACATCTTATGATGCGCTAAATAACACTCCTTGTTTACTTCCATCTTGGATCTCAAAGGCTGCTGCTCGGCAGAGAAGAGGAAGGGCAGGTCGTGTTCAACCAGGCGAATGTTACCATCTTTATCCTAGATGTGTTTATGATACTTTTGCTGATTATCAATTGCCGGAGCTTTTGAGAACACCTTTGCAGTCCCTATGTCTTCAAATCAAAAGTCTAAACCTTGGAAGTATTTCAGAATTCCTATCCAGAGCTCTGCAACCACCAGAGCCTTTGTCGGTTCAAAATGCTGTTGAATATTTGAAGATTATTGGGGCCTTGGACGAAGATGAAAATCTGACAGTTTTAGGTCGTAAATTGTCAATGCTCCCTGTAGAGCCTAAACTTGGAAAGATGCTTATCTTAGGAGCTATCTTCAATTGTTTAGATCCCGTAATGACTGTTGCCGCTGGTCTTAGTGTAAGAGATCCATTTTTGATGCCATTTGACAAGAAGGGTCTTGCAGAGTCTGCCAAGGCCCAGTTTGCCGCAGGTGCCTACAGTGATCATCTTGCACTAGTTCGGGCTTATGAGGGTTGGAGCAATGCAGAAAAACAGAAAGCAGGCTATGAATACTGTTGGAAAAATTTCCTTTCTTCACAAACACTTAGAGCCATTGACTCTCTTCGAAAACAATTTTTTTGCTTGCTCAAAGATATAGGTTTGGTTGGTCATAATACTGACAATTGCAATGCATGGAGTCATGATGAGCATCTGGTCCGAGCAGTCATTTCAGCTGGTTTGTTTCCTGGAGTATGCTCCGTTGTGAACAAAGAGAAGTCAATAGCATTGAAGACAATGGAGGATGGTCAAGTTCTTCTGTATGCTAACTCTGTAAATGGGGCTGTGCCCAAAATTCCATTCCCGTGGCTGGTATTCAATGAAAAGGTGAAGGTGAATTCAGTATTCCTCCGGGATTCAACTGGTATATCTGATTCAATGCTGCTCTTATTTTGTGGGAATGTTTCCAGAGGTGGACTAGACGGTCACCTGAAAATGCTGGGGGGATATTTGGAATTTTTCATGAATCCTGCATTAGCTGAGACTTACTTAAGCCTGAAGAAGGAGCTGGAGGAGTTAATACAGAGAAAACTTCTGGATCCCAAGTTGGATATACAATCATCTGTTGAGCTTCTTTCAGCTGTCAGATTTCTGGTATCGGAGGACCAGTGTGGTGGGAAATTTGTCTTTGGTCGTCAAGCGCTAGCACCATCAAATAAGGCCAAAGACCCCAAACATGTTTCTATTGAGGGCAGTAATTATAAAAACCAGCTGCAAACATTGCTTGCCAGGGCCAGACATGACCCACCAACTTACAAAACAAAACAACTGAAAAACAATCAGTTCCGCTCTACTGTCACGTTCAATGGCTTGAATTTTGTTGGCCAGCCTTGCAACAGCAAGAAGCAAGCAGAACAGGACGTTGCTTCTGAGGCTCTTCTGTGGTTAATGGGGGATACACATTCATCTAGTAATGATATTGATGAGCTGCAATCATTGCTTGGCAAGGCTCGACATAAACCCTCAAATAAGGCAGAAGTCTCCAAAAGGAGTTCTGTTGAGATTGGTGATTGTATTGGTCAGCTGCAAGCATTGCTTGCCAGGGCTGGACATGAATCACCAACTTATAAAACAAAACAACTGGGAAACAACCAATTCCGCTCTACCGTCATATTCAATGGCTTGGATTTTGCAGGCCACCCTTGTAACAGCAAGAAACAAGCAGAAAGGGATGCTGCTGCTCAGGCTCTTCTATGGTTAAAAGGTGATACACATCAACATCATGATGATGATGATTATGATGACCATATGTCTTTGCCTTTCAAAAAGAGCAAAAAAAGAAGCAAAATTTCACTGAATGGTGCTAAAAGAAGATGA 3933 0.43 MLYSATFQGFIRTTTSASTTMSLRGPLFLLPHRARRLSLLSISLRHPSLGLRNFHVPSKIRSGIGPVRSVAPSRTTEVDLKERQGVGFRRRSIALPFWHQQSSSYGRFAYHDVSSDDSDMELGSPQQQMGGSSLDNIDEWRWKLTMLLRNKDERELISREKKDRRDFEHLSALATRMGLYSRQYSKLVVFSKEPLPNYRSDLDDRRPQREVVIPYHVHGEVNSLLNAHLSKKSKSFGGVFDTSCHRSSSAGIPADEGILKEPEPFSQNNVVRERILRRKSLQLRFQQEEWQESPEGQKMLEFRKTLPAFKAKDALLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGAVCSIICTQPRRISAMSVSERVAAERGENLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVVVDEIHERGMNEDFLLVVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTLHIPGFTYPVRAHFLEDILEVTRYRLTSYNQIDDYGQEKTWKMQKQVQALKKRKTEIASVVEDALEAADFKEYSLCTRESLSCWSPDSIGFNLIEHILCHIIKNGRPGSILVFMTGWDDINSLKDQLQAHPLLGDPSKVLLLACHGSMDSSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDTFADYQLPELLRTPLQSLCLQIKSLNLGSISEFLSRALQPPEPLSVQNAVEYLKIIGALDEDENLTVLGRKLSMLPVEPKLGKMLILGAIFNCLDPVMTVAAGLSVRDPFLMPFDKKGLAESAKAQFAAGAYSDHLALVRAYEGWSNAEKQKAGYEYCWKNFLSSQTLRAIDSLRKQFFCLLKDIGLVGHNTDNCNAWSHDEHLVRAVISAGLFPGVCSVVNKEKSIALKTMEDGQVLLYANSVNGAVPKIPFPWLVFNEKVKVNSVFLRDSTGISDSMLLLFCGNVSRGGLDGHLKMLGGYLEFFMNPALAETYLSLKKELEELIQRKLLDPKLDIQSSVELLSAVRFLVSEDQCGGKFVFGRQALAPSNKAKDPKHVSIEGSNYKNQLQTLLARARHDPPTYKTKQLKNNQFRSTVTFNGLNFVGQPCNSKKQAEQDVASEALLWLMGDTHSSSNDIDELQSLLGKARHKPSNKAEVSKRSSVEIGDCIGQLQALLARAGHESPTYKTKQLGNNQFRSTVIFNGLDFAGHPCNSKKQAERDAAAQALLWLKGDTHQHHDDDDYDDHMSLPFKKSKKRSKISLNGAKRR 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1675 1310 SUPERFAMILY dsRNA-binding domain-like 1102 1168 - -
Lele08g1675 1310 MobiDBLite consensus disorder prediction 1294 1310 - -
Lele08g1675 1310 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 925 1007 IPR011709 -
Lele08g1675 1310 Pfam Double-stranded RNA binding motif 1211 1272 IPR014720 -
Lele08g1675 1310 Pfam Double-stranded RNA binding motif 1106 1168 IPR014720 -
Lele08g1675 1310 MobiDBLite consensus disorder prediction 1277 1310 - -
Lele08g1675 1310 Gene3D - 1090 1172 - -
Lele08g1675 1310 CDD DEXHc_RHA-like 322 482 - -
Lele08g1675 1310 FunFam Putative ATP-dependent RNA helicase DHX36 748 852 - -
Lele08g1675 1310 Pfam DEAD/DEAH box helicase 314 467 IPR011545 GO:0003676|GO:0005524
Lele08g1675 1310 Gene3D - 1210 1276 - -
Lele08g1675 1310 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 572 746 IPR001650 -
Lele08g1675 1310 CDD SF2_C_RHA 563 714 - -
Lele08g1675 1310 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 483 IPR014001 -
Lele08g1675 1310 PANTHER ATP-DEPENDENT RNA HELICASE 253 1043 - -
Lele08g1675 1310 FunFam DExH-box ATP-dependent RNA helicase DExH3 260 484 - -
Lele08g1675 1310 SMART DRBM_3 1106 1169 IPR014720 -
Lele08g1675 1310 SMART DRBM_3 1210 1273 IPR014720 -
Lele08g1675 1310 Pfam Helicase associated domain (HA2) 769 842 IPR007502 GO:0004386
Lele08g1675 1310 Gene3D - 748 858 - -
Lele08g1675 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 885 IPR027417 -
Lele08g1675 1310 Gene3D - 263 484 IPR027417 -
Lele08g1675 1310 MobiDBLite consensus disorder prediction 1277 1293 - -
Lele08g1675 1310 SMART helicmild6 600 706 IPR001650 -
Lele08g1675 1310 Pfam Helicase conserved C-terminal domain 573 705 IPR001650 -
Lele08g1675 1310 Gene3D - 569 724 IPR027417 -
Lele08g1675 1310 FunFam DExH-box ATP-dependent RNA helicase DExH3 568 724 - -
Lele08g1675 1310 SUPERFAMILY dsRNA-binding domain-like 1208 1284 - -
Lele08g1675 1310 SMART ultradead3 304 497 IPR014001 -
Lele08g1675 1310 SMART ha2_5 768 859 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1675 Lele-ChrLele08 11292695 11302914 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1675 08 11292695 11302914 Lele08g1675 08 11292695 11302914 ECH
Lele06g1678 06 11325590 11336928 Lele08g1675 08 11292695 11302914 hybridization