Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1363 ATGTTGTTCTTCTCCTATTTCAAAGACCTGGTGGGCAGAGAAGTGACGGTGGAGCTCAAGAACGATTTGGCTATTCGAGGAACATTGCACTCAGTGGACCAATACCTTAACATCAAGCTTGAGAACACTCGCGTCGTCGATCAAGACAAATACCCTCACATGATTGAGTTCTACTCTTTCACTGGAATCTATCTTACTAAAGAGTGGTCCTCTTGTCACTTGTTACTAGCTTATGAGAAGCTTTCTGTAAGGAACTGCTTCATCAGGGGGTCGGTGGTAAGATATGTGCAGTTGCCTCCGGAAGGAGTGGACGTTGAACTTTTGCATGATGCCACAAGGAGAGAAGCTCGCGGTGGCTGA 360 0.4639 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMIEFYSFTGIYLTKEWSSCHLLLAYEKLSVRNCFIRGSVVRYVQLPPEGVDVELLHDATRREARGG 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1363 119 CDD LSm2 2 116 IPR016654 GO:0006397
Lele08g1363 119 SMART Sm3 5 98 IPR001163 -
Lele08g1363 119 Gene3D - 1 118 - -
Lele08g1363 119 SUPERFAMILY Sm-like ribonucleoproteins 3 118 IPR010920 -
Lele08g1363 119 Pfam LSM domain 7 97 IPR001163 -
Lele08g1363 119 PIRSF Lsm2 73 119 IPR016654 GO:0006397
Lele08g1363 119 PIRSF Lsm2 1 64 IPR016654 GO:0006397
Lele08g1363 119 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 1 117 IPR016654 GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1363 Lele-ChrLele08 8739905 8742685 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1363 08 8739905 8742685 Lele08g1363 08 8739905 8742685 ECH