Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0966 ATGGCGGAGCATTTGGCGTCGATTTTCGGAACGGAAAAGGACAGGGTGAACTGCCCCTTCTACTTCAAGATCGGAGCCTGCAGGCATGGCGACCGCTGCTCCAGACTTCACACTAAGCCAACCATTAGCCCTACTCTTCTTCTCTCCAATATGTACCAGAGGCCTGACATGATCACTCCTGTAGTTGACCCCAACCAAGGACAAGCACTTGATCCAGACAAGGTCCAAGATCACTTTGAGGATTTCTATGAAGATCTATTTGAGGAGTTGAGCAAGTATGGAGAAATTCAGAGCTTGAATATTTGTGATAATTTAGCCGACCACATGGTTGGCAACGTATATGTTCAGTTTAAAGAGGAGGATCATGCCGCTAATGCGCTGATGAATCTGAGTGGCAGATTTTATTCAGGGCGACCCATCATTGTTGACTTCTCTCCTGTGACGGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTTTGCAATCGTGGTGGCTATTGCAATTTCATGCACCTGAAGAAGATTAGCAGGGAGTTGAGACGGAAGTTATTTGGGAGAAACAAGCGATGGCAGGGTCGTGGGGGAAGCAGAAGCAGGAGCCCTCCGAGGCATCGTAACCATGATGACCGTTCGCATGGCGGACGTGGTTCTGGTAGAAGAGATTATGACAGACATCATGGTCACCAAGGTAGGAGCAGGTTGCCTAGGAGCCGTAGCCCTCGGAGAAGAACAAATCGAAGTAGGAGTCCCATGGGAAGGGACAGGAGTCCTGTTAGAGAAAGTAGTGTGGAAAGGAGAGCTAGAATTGAGCAATGGAACAGGGAGAAGGAACAAGAATCTGGCAACAAGGACAACAGAAATGGTAATGGTAATGATAATGAACGGGCTGTTGCACAGAATGGAGGTGAATTTGATGATCGTCGAATATAG 936 0.4754 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLLLSNMYQRPDMITPVVDPNQGQALDPDKVQDHFEDFYEDLFEELSKYGEIQSLNICDNLADHMVGNVYVQFKEEDHAANALMNLSGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRKLFGRNKRWQGRGGSRSRSPPRHRNHDDRSHGGRGSGRRDYDRHHGHQGRSRLPRSRSPRRRTNRSRSPMGRDRSPVRESSVERRARIEQWNREKEQESGNKDNRNGNGNDNERAVAQNGGEFDDRRI 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0966 311 PRINTS U2 auxiliary factor small subunit signature 131 155 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele08g0966 311 PRINTS U2 auxiliary factor small subunit signature 76 91 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele08g0966 311 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele08g0966 311 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele08g0966 311 PRINTS U2 auxiliary factor small subunit signature 166 178 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele08g0966 311 PRINTS U2 auxiliary factor small subunit signature 104 126 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele08g0966 311 MobiDBLite consensus disorder prediction 249 285 - -
Lele08g0966 311 ProSiteProfiles Zinc finger C3H1-type profile. 149 176 IPR000571 GO:0046872
Lele08g0966 311 CDD RRM_U2AF35B 44 146 - -
Lele08g0966 311 SUPERFAMILY RNA-binding domain, RBD 78 150 IPR035979 GO:0003676
Lele08g0966 311 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 278 IPR009145 GO:0000398|GO:0003723|GO:0089701
Lele08g0966 311 Gene3D - 43 146 IPR012677 -
Lele08g0966 311 SMART c3hfinal6 149 175 IPR000571 GO:0046872
Lele08g0966 311 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Lele08g0966 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 147 IPR000504 GO:0003723
Lele08g0966 311 MobiDBLite consensus disorder prediction 188 311 - -
Lele08g0966 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 140 IPR000504 GO:0003723
Lele08g0966 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 174 IPR000571 GO:0046872
Lele08g0966 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Lele08g0966 311 SMART rrm1_1 45 143 IPR000504 GO:0003723
Lele08g0966 311 MobiDBLite consensus disorder prediction 231 248 - -
Lele08g0966 311 MobiDBLite consensus disorder prediction 203 230 - -
Lele08g0966 311 SMART rrm2_1 68 143 IPR003954 GO:0003676
Lele08g0966 311 FunFam Splicing factor U2AF small subunit 45 146 - -
Lele08g0966 311 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0966 Lele-ChrLele08 6128952 6131537 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0966 08 6128952 6131537 Lele08g0966 08 6128952 6131537 ECH
Lele05g1112 05 6953451 6956031 Lele08g0966 08 6128952 6131537 hybridization
Lele06g0978 06 6071688 6074278 Lele08g0966 08 6128952 6131537 hybridization