Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0546 ATGTCTTGGTTTGACAATTTAATGAAGTCTTTTACCTCAAGGTGTCTGACATTGGCAGGTGTACAAGCTCAGTTCAGTTATGATGTCTGCATGCAGCTATATAAGAAAGAACATCTGACTGAGAACTCCTTCCTATCCATATATGGGTTGCAAGGGGCTGGTTTTAATGCTCAGCAATTGGCTGTTGTTTCGGGGCTTTATGAATGGCGGGATATTGTTGCTCGTACAGAGGATGAGAGCACTGGCTATGTATTGCCAAATAAAACTCTTCAGGAAATTGCTAAGCAGATGCCTGTCACAAAAGAGAGACTGCAAAAATTGACAAAGTCAAAGCACCCACATTTTGAGCTCAACTATGATAGCATTATCAGCATCATTATACATTCTCTGGAAAATGCTCCTGCCTTTGAAGCAACTGCACAACAATTGAAAGAGATACGTGTCACAACTCCATTGGGTGATATACCTGACAAATACAGAACTGAAGCTCCCTTACCTAAAATGCCTAACTCAAATATCGCAAATTCAAGAAAAGGAAGTATTGGAGTTGAAAGTGCCAAATCACCATTTCCTTTTGCCCTGAAAATGGATACTCTTCAGCATCAAAATAAACCTGGACAGCTTAAATTTGGATCAAATAGTCCTACTTCAGAATTCTCTCACGGCAGTCTCAATACTTCACAACAGAACAGGGTAGCTATTTCTATGCTGTGGGATAATTTTTTTTTTGTTGCTGTTGGCTTGCTTATTGCGACTGAAGCCAAATTTGATTATGGAGATAAAAGAAAACAGGTCATGTTTGAAGACGATGAAGAGAATGCGTCTTCCTATGGTGACGATGGCATTACACCAATCCTCATCGTCGAAGCAAAGGTGGGTTTGGTGGAACAGGGAAGAGACAGGGTAGGGCATGTGAACAAGGTTGGTTATGTGAAGAGATTCATCGGTAAGAAGAGGAAGCCTTACCGAAGGGTTAGGCGACCCACTGTTTCAAAGGCACTTCAAGAGCTTTTCGTGTTATGCCGAGACACATTTAAAGGCCCTGGCACTGTTCCTTCTTCCCAAGATGTTCAGAAACTATGCCACATTCTCGATGCCGTGGAGCCAGAAGATTTTGGACTAAGCAGTGACTTGAAATTTTTCAAGCCTGGAAATTTGTTCAAAGAGAATCCAAGGGTCACTTACACAACCATTTACCAGTGCGATAATTTCTCTGTAAGCCTCGAAAGCTCTTGTGTATTGAAATTGGCAAAGTTAAAAGCTAATAAGGTGTTCAACGCACCTTGTGATGCTTCAGTGTTGTATCCGACCACAGGGGGCAATATCCATGAATTCACAGCCATAACTCCATGCGCAGTGCTTGACGTGCTTGGCCCTCCTTATTCTAAACAAGATGGCCGCGACTGCTCCTACTACAGAGATCACCCCTACAATGCTTTTTCAAGTCCGTAA 1452 0.4222 MSWFDNLMKSFTSRCLTLAGVQAQFSYDVCMQLYKKEHLTENSFLSIYGLQGAGFNAQQLAVVSGLYEWRDIVARTEDESTGYVLPNKTLQEIAKQMPVTKERLQKLTKSKHPHFELNYDSIISIIIHSLENAPAFEATAQQLKEIRVTTPLGDIPDKYRTEAPLPKMPNSNIANSRKGSIGVESAKSPFPFALKMDTLQHQNKPGQLKFGSNSPTSEFSHGSLNTSQQNRVAISMLWDNFFFVAVGLLIATEAKFDYGDKRKQVMFEDDEENASSYGDDGITPILIVEAKVGLVEQGRDRVGHVNKVGYVKRFIGKKRKPYRRVRRPTVSKALQELFVLCRDTFKGPGTVPSSQDVQKLCHILDAVEPEDFGLSSDLKFFKPGNLFKENPRVTYTTIYQCDNFSVSLESSCVLKLAKLKANKVFNAPCDASVLYPTTGGNIHEFTAITPCAVLDVLGPPYSKQDGRDCSYYRDHPYNAFSSP 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0546 483 SUPERFAMILY HRDC-like 40 132 IPR010997 GO:0000166|GO:0044237
Lele08g0546 483 Pfam HRDC domain 59 126 IPR002121 GO:0003676
Lele08g0546 483 SMART hrdc7 56 135 IPR002121 GO:0003676
Lele08g0546 483 SUPERFAMILY RmlC-like cupins 330 475 IPR011051 -
Lele08g0546 483 Pfam PCO_ADO 414 480 IPR012864 GO:0016702
Lele08g0546 483 FunFam Putative exosome component 10 43 138 - -
Lele08g0546 483 Gene3D HRDC domain 42 136 IPR044876 -
Lele08g0546 483 ProSiteProfiles HRDC domain profile. 56 136 IPR002121 GO:0003676
Lele08g0546 483 PANTHER UNCHARACTERIZED 334 406 IPR012864 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0546 Lele-ChrLele08 3300090 3306353 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0546 08 3300090 3306353 Lele08g0546 08 3300090 3306353 ECH
Lele05g0708 05 4169206 4174241 Lele08g0546 08 3300090 3306353 hybridization