Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0052 ATGGGGACTGAAAATCCTGGACGTTCAAGTTTTCCTGCTAGGCCTGCATCAACGCCTTTTGCCCCTCCACAGACTATGACACCGTTTTCATCAACTGGTCCCGTGGTTGGATCTGAGCCTCCTTTTCCCCGGCCTACTCCTCCTGCTGTTCCCCAACCTGCAGTGCCATGGTCATCATCCGGACCTGCAGTCACACCAGGGGCATCCAATTTTAGACCTATCCCTCCAGGCAGGTTTAATGATCCATCTGTGCCTTCGCCTCCAACGTACAATGTCCCACCTGCTGGTGGACCTTTCCAGCGTTTTCCAACTCCACAGTTTACCCCAACAGCCCAAGCTCCTCCACCTGTTGCACCCATAGGACAACCATCAATCCCGCCTTCTGTGAATCAAGCACCACCTTTTCCGGTAGCCCTTCAACCACAAACACCAATTGTTCCAATGGGTTCTCCCCCACAAAGTGCTACTCCTGCACCTTTGAAGTCTAATGTTCCTCCTTTGTCAGATTCATCACTTCCAGGCTCTAGGCCTAATTTTCAGCCATCTTTTCCTGGTTATGTCCGCAAGCAGACTGGTACTGAAGTGCAAGGTCCACCTATGTATCCATCTTTTCCCACTAATCAAGGTAATTATGCTCCTGCTCCTCCTGCTCTATCTCATCAAGGGAGCTATGTTCCACCGCCTCCAGTGGCTGCTCCATTAGGCATGCAGCAGATGCAACAGCCAGGATATGGACCTTCTGTTGGTGCTATTCAGGGCCTGGCAGAAGACTTCAGTTCACTCTCTATTCAAACTCGTCCTGGTTCAATGGAAAAAGTAGTTGATGCTAAAGAACTGCCAAGGCCACTGGATGGGGATGTAGAGCCAGCATCTCTGGCTGACCTTTTCTCCATGAACTGCAACCCCAGATATCTACGGCTGACAACCAGTTCAATTCCCAGCTCCCAGTCCTTAGCTTCAAGATGGCATCTACCTCTTGGAGCAGTTGTTTGTCCACTTGCAGAAGCTCCTGATGGGGCAGAGGTGCCTATAATCAATTTTGCCCCAACTAGTGTCATACGGTGCAGAAGATGTCGCACTTATGTGAATCCATATGTGACATTCACAGATGCTGGAAGAAAATTTCGGTGCAATGTTTGCACTTTGCTAAATGATGTGCCTAGTGAATATTTTGCTCAATTGGATGCCACTGGTAGAAGAGTTGATTTGGATCAAAGACCTGAGCTTACAAGGGGTACAGTGGAATTTGTTGCCCCTGCTGAATATATGGTGCGACCTCCTATGCCCCCAGTGTATTTCTTCCTCATTGATGTTTCCATATCTGCGGTTAGAAGTGGAATGATTGAGGTTGTGGCCCAAACAATCAAGTCATGTCTAGATGAGTTGCCTGGCTCTCCACGAACCCAAATAGGTTTTGCGACATTTGACAGCACAATTCATTTTTATAATATGAAGTCGTCCTTGACTCAGCCACAGATGTTGGTAGTCTCAGATCTGGATGACATATTTGTTCCACTTCCAGATGATCTCCTTGTTAATTTATCTGAATCCAGAAGTGTGGTGGAGACCTTCCTTGACAGTTTGCCATCCATGTTCCAGAACAATGTAAATATTGAATCAGCCTTTGGTCCGGCTCTTAAGGCTGCGTTCATGGTGATGAGTCAACTTGGAGGGAAATTGTTAATTTTCCAAAATACACTGCCATCTCTTGGCATTGGACGCTTAAAATTACGTGGAGATGATGCTCATGTTTATGGGACTGATAAAGAACACATGTTAAGGCTGCCAGAAGATCCATTTTACAAGCAAATGGCTGCTGAGTTTTCTAAATACCAGATCTGTGCCAATGTGTATGCATTTAGTGACAAGTACACTGACATTGCATCCTTAGGAACTTTGGCAAAGTATACTGCCGGTCAAGTATATTACTATCCAGCTTTCCAATCAACTATTCATGGGGAAAAGTTGAGGCATGAGTTAAGGAGAGACCTAACCAGAGAAACTGCCTGGGAAGCTGTACTGCGCATTAGATGTGGAAAAGGTGTTCGCTTCACAACTTTTCATGGGAACTTCATGCTAAGATCTACCGATTTGTTAGCACTTCCAGCTGTAGATTGTGATAAAGCTTTTGCCATGCAGTTATCTCTTGAAGAGACGTTGCTCACAACTCAGACTTTGTATTTCCAAGTTGCATTGCTATATACTGCATCTTGTGGGGAAAGACGGATCAGAATACACACTGCTGCAGCTCCAGTAGTTACAGACTTGGGAGAGATGTATCGCCTGGCTGATACTGGAGCCATAGTTTCTCTACTTAGTAGGCTAGTAATTGAGAAAACATTGTCTAATAAACTGGAAGATGCAAGGAGTGCTGTACAGCTAAGAATTGTCAAGGCCCTCAGAGAATATCGAAATCTATATGCTGTGCAACATCGCTTGGCTAACAGGATGATATTTCCTGATTCTCTAAAATTCCTACCATTGTACGGCTTAGCACTTTGTAAATCAACACCTCTCCGTGGAGGGCATGCTGACGCTCCACTGGATGAACGGTGTGCGGCAGGATACACTATGATGGCTCTACCAATAAAAAGGCTGTTGAAATTTCTATATCCAAGCTTGATTCGACTTGATGAATATCTGTTCAAGTCTGATGAATTAAAAAACATTGAGAAAAGGTTACCATTGACTGGTGAGAGCATGGATTCTAGAGGCCTCTATGTATTCGATGATGGCTTCCGGTTCATTATATGGTTTGGTAGAGTGCTTTTACCTGATATAGCTATGAATTTGCTTGGGGCAGACTTCGCTGCAGAATTATCAAAGGTTACTCTTAAGGAGCATGATAATGAGATGTCAAGGAAGCTAATCAGGATACTTGAGAAACTGAGAAATACTGATCATTCTTATTATCAATTGTGCTATCTTGTGAGGCAAGGCGAACAGCCCAGAGAAGGATTCCTTATCCTTGCAAATCTTGTCGAGGATCAGATGGGTGGTAACAGTGGGTATGCTGATTGGATGCTTCAGCTATCCCAACAGGTGCAGCAATAA 3054 0.4496 MGTENPGRSSFPARPASTPFAPPQTMTPFSSTGPVVGSEPPFPRPTPPAVPQPAVPWSSSGPAVTPGASNFRPIPPGRFNDPSVPSPPTYNVPPAGGPFQRFPTPQFTPTAQAPPPVAPIGQPSIPPSVNQAPPFPVALQPQTPIVPMGSPPQSATPAPLKSNVPPLSDSSLPGSRPNFQPSFPGYVRKQTGTEVQGPPMYPSFPTNQGNYAPAPPALSHQGSYVPPPPVAAPLGMQQMQQPGYGPSVGAIQGLAEDFSSLSIQTRPGSMEKVVDAKELPRPLDGDVEPASLADLFSMNCNPRYLRLTTSSIPSSQSLASRWHLPLGAVVCPLAEAPDGAEVPIINFAPTSVIRCRRCRTYVNPYVTFTDAGRKFRCNVCTLLNDVPSEYFAQLDATGRRVDLDQRPELTRGTVEFVAPAEYMVRPPMPPVYFFLIDVSISAVRSGMIEVVAQTIKSCLDELPGSPRTQIGFATFDSTIHFYNMKSSLTQPQMLVVSDLDDIFVPLPDDLLVNLSESRSVVETFLDSLPSMFQNNVNIESAFGPALKAAFMVMSQLGGKLLIFQNTLPSLGIGRLKLRGDDAHVYGTDKEHMLRLPEDPFYKQMAAEFSKYQICANVYAFSDKYTDIASLGTLAKYTAGQVYYYPAFQSTIHGEKLRHELRRDLTRETAWEAVLRIRCGKGVRFTTFHGNFMLRSTDLLALPAVDCDKAFAMQLSLEETLLTTQTLYFQVALLYTASCGERRIRIHTAAAPVVTDLGEMYRLADTGAIVSLLSRLVIEKTLSNKLEDARSAVQLRIVKALREYRNLYAVQHRLANRMIFPDSLKFLPLYGLALCKSTPLRGGHADAPLDERCAAGYTMMALPIKRLLKFLYPSLIRLDEYLFKSDELKNIEKRLPLTGESMDSRGLYVFDDGFRFIIWFGRVLLPDIAMNLLGADFAAELSKVTLKEHDNEMSRKLIRILEKLRNTDHSYYQLCYLVRQGEQPREGFLILANLVEDQMGGNSGYADWMLQLSQQVQQ 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0052 1017 Gene3D von Willebrand factor, type A domain 429 666 IPR036465 -
Lele08g0052 1017 Gene3D Severin 872 996 IPR029006 -
Lele08g0052 1017 Gene3D - 300 752 - -
Lele08g0052 1017 FunFam protein transport protein Sec24D isoform X1 429 666 - -
Lele08g0052 1017 Pfam Sec23/Sec24 zinc finger 353 390 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lele08g0052 1017 MobiDBLite consensus disorder prediction 108 154 - -
Lele08g0052 1017 Pfam Sec23/Sec24 beta-sandwich domain 669 752 IPR012990 -
Lele08g0052 1017 Gene3D Sec23/Sec24 helical domain 753 1015 - -
Lele08g0052 1017 Gene3D - 298 411 - -
Lele08g0052 1017 MobiDBLite consensus disorder prediction 78 100 - -
Lele08g0052 1017 MobiDBLite consensus disorder prediction 38 55 - -
Lele08g0052 1017 SUPERFAMILY Helical domain of Sec23/24 764 871 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lele08g0052 1017 Pfam Sec23/Sec24 helical domain 764 867 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lele08g0052 1017 SUPERFAMILY Zn-finger domain of Sec23/24 344 426 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lele08g0052 1017 PANTHER SEC24-RELATED PROTEIN 131 1015 - -
Lele08g0052 1017 MobiDBLite consensus disorder prediction 1 177 - -
Lele08g0052 1017 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 881 1017 IPR036180 -
Lele08g0052 1017 Pfam Sec23/Sec24 trunk domain 427 663 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lele08g0052 1017 MobiDBLite consensus disorder prediction 155 177 - -
Lele08g0052 1017 CDD Sec24-like 427 668 IPR041742 GO:0006886|GO:0006888|GO:0030127
Lele08g0052 1017 SUPERFAMILY beta-sandwich domain of Sec23/24 196 762 - -
Lele08g0052 1017 SUPERFAMILY vWA-like 427 666 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0052 Lele-ChrLele08 325712 332163 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g0237 05 1317907 1324680 Lele08g0052 08 325712 332163 hybridization
Lele06g0053 06 351124 357558 Lele08g0052 08 325712 332163 hybridization