Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele07g1185 ATGAAGCTTCTAGACCAGAACTTCGCGCCCAACCAACCGGGAACGGTCAAGATCATCCCCGAAGAACCCGACGACCTATGGGTGGTTTACAACCTCATCGCCAACGGAGACGTCGTCACCGCCGATACAACTCGCAAAGTTCACCTGCAGTCCACCAAGAAAACCGCCTCACGTGTAAAACTCACCATCCCCGTCAAAGTCACGTGCCGCGACTTCCACAAAGATTCTGCCACCGTGCGCGTTCAAGGCAGGAACATCGAGGACAACCAGTACGTCGCCGCCGGCTCATTCCACACCTTGACCCTCGAAAAGAACAAAGGCTTCGAACTCTCCAAAAAGACTTGGGATCCGACTGCTGTGGCATCATTATCCGAAATCTCCGAGAAATCATCAGGCGCTGACCTCGCCGTGGTTCTTATACAAGAGGGCCAAGCAGAGGTTTATTTGGTGGGGAACGGGTTAACCACGCTCTGCTCTAAAACCGAAGCTTCACGAAAAAGAAAGAAATCAGCCAGCAGCGTGTTTTTCCAAGACATCTTTAATGCGTTTGTGAAGCACGTGGATTTCAGCAGCGTTAAAAGCGTAATGATAGCTAGTGCTGGATCGACGAAGGACGAGTTTCGGAGGTTTCTGCTATCGGAAGCTAAAAGATTGAAGATGAGAACAATCGAGGACAATAAGTCGAGAATCGCGGTGGCAGACTGTAAGGGCGATCTGAAGGAGGTGCTGAATGACGATGGGGTGATGAATATGATAAAAGATAGCAAGGTCGTGTTGGAGATTAGAGCTATCCAAGAGATGTGGGACTTGGTGGACAAGGGTTCGGGTCGGGCATGTTATGGTTCGAAGAGCGTGGAGGCGGCGCAGGAGATGACGGCGATTGAGACGCTGTTGATAACGGACGATCTGTACAGAAGCTCAGATGTGAAGACGAGGCACAAGTATACGGATTTGGCTAAATCAGTGAGAAAGGGAGGAGGGAAGGTTCTGGTATATTCCTCCATGCATGTCTCAGCACAACAGCTTGCCCAGCTCACGGGAGTCGCAGCGATTCTGAGGTTTCCCCTGCCCGACCTTGATGACGATGACGTGGTTGTTTAA 1101 0.5095 MKLLDQNFAPNQPGTVKIIPEEPDDLWVVYNLIANGDVVTADTTRKVHLQSTKKTASRVKLTIPVKVTCRDFHKDSATVRVQGRNIEDNQYVAAGSFHTLTLEKNKGFELSKKTWDPTAVASLSEISEKSSGADLAVVLIQEGQAEVYLVGNGLTTLCSKTEASRKRKKSASSVFFQDIFNAFVKHVDFSSVKSVMIASAGSTKDEFRRFLLSEAKRLKMRTIEDNKSRIAVADCKGDLKEVLNDDGVMNMIKDSKVVLEIRAIQEMWDLVDKGSGRACYGSKSVEAAQEMTAIETLLITDDLYRSSDVKTRHKYTDLAKSVRKGGGKVLVYSSMHVSAQQLAQLTGVAAILRFPLPDLDDDDVVV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele07g1185 366 FunFam Protein pelota homolog 256 365 - -
Lele07g1185 366 SUPERFAMILY L30e-like 250 356 IPR029064 -
Lele07g1185 366 TIGRFAM pelota: mRNA surveillance protein pelota 2 356 IPR004405 GO:0070481|GO:0070966|GO:0071025
Lele07g1185 366 FunFam Protein pelota homolog 1 129 - -
Lele07g1185 366 Pfam eRF1 domain 1 1 125 IPR005140 -
Lele07g1185 366 Gene3D eRF1 domain 2 133 252 IPR042226 -
Lele07g1185 366 SMART eRF1_1_2 1 128 IPR005140 -
Lele07g1185 366 SUPERFAMILY Translational machinery components 131 256 - -
Lele07g1185 366 Pfam eRF1 domain 2 135 253 IPR005141 -
Lele07g1185 366 Pfam eRF1 domain 3 259 356 IPR005142 -
Lele07g1185 366 Gene3D Pelota, domain A 1 129 IPR038069 -
Lele07g1185 366 PANTHER PELOTA 1 362 IPR004405 GO:0070481|GO:0070966|GO:0071025
Lele07g1185 366 Gene3D - 254 365 IPR029064 -
Lele07g1185 366 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 126 IPR038069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele07g1185 Lele-ChrLele07 7143484 7144584 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1185 07 7143484 7144584 Lele13g1714 13 25666901 25671060 CCT
Lele07g1185 07 7143484 7144584 Lele14g1658 14 24063950 24067817 CCT
Lele07g1185 07 7143484 7144584 Lele16g0705 16 3972280 3976150 CCT
Lele07g1185 07 7143484 7144584 Lele07g1185 07 7143484 7144584 ECH
Lele05g1141 05 7120094 7121194 Lele07g1185 07 7143484 7144584 hybridization
Lele06g1002 06 6217264 6217773 Lele07g1185 07 7143484 7144584 hybridization