Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0906 ATGGCATGGATGGAAAACAGTGCAGGGAATGGGAAAGAAAAGGAATTGATGGGAGAAAATGGTTTCTTGAAGGTGACACAACCTTCAATTAGTAGTAGCGGCTCTGGTGGGGATATTGATCCAGTACGTGAGAGAGGTGAAGGGAAAGATAATTTTTCGTATGCCAACATCCTACGTTCAAGGAACAAGTTTGGTGATGCTCTTGTTTTATATGATCGTGTTCTTGAGAATGATGGTGGAAATGTAGAGGCTTTAATAGGAAAAGGGATATGCCTGCAAATGCAGAACATGGGGAGGCTTGCTTTTGACAGTTTTGCTGAGGCTATCAAGTTGGATCCTCGTAATGCTTGTGCACTTACACATTGCGGTATTTTGTACAAAGAAGAAGGTCGTTTGATGGAGGCAGCTGAGTCGTATCAGAAGGCTTTACAAGTGGATCCTTCATACAAAGCAGCTTCTGAATGCCTCGCCATTGTTTTAACAGATATTGGTACCAACATAAAGCTTTCAGGAAACACTCAAGAGGGAATTCAAAAATATTATGAAGCTCTCAAAATAGATTCTCACTATGCTCCGGCATATTATAACCTTGGCGTTGTCTATTCTGAAATGATGCAATATGACATGGCCCTTAGTTTCTATGAGAAGGCTGCATCAGAGAGGCCTATGTATGCGGAAGCATATTGCAATATGGGTGTGATTTACAAAAATCGTGGTGATTTGGAAGCAGCTATTGCTTGCTATGAGAGTGAATTGCCTTTTACTGTTGTTATATATGGTTTGGTGATGCTCTGTGGCAGGTGCTTAGCTGTTTCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCCTTGACTGATTTGGGAACGAAGGTTAAATTGGAAGGGGACATCAATCAAGGTGTGGCTTATTATAAGAAAGCCTTGTATTATAATTGGCATTATGCTGATGCTATGTATAATCTCGGGGTTGCTTATGGCGAGATGCTCAAGTTTGACAAGGCTATTGTATTTTATGAACTTGCTTTTCACTTCAATCCTCATTGTGCGGAAGCATGTAACAATCTAGGGGTTATATATAAAGATAAAGACAACCTTGATAAAGCTGTAGAGTGTTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCTCAATCACTGAATAATCTTGGTGTTATCTACACTGTCCAGGGTAAAATTGACGCTGCTGCAAGTATGATTGAGAAAGCTATCATTGCAAATCAAACATATGCGGAAGCATACAATAATTTAGGAGTTCTTTATAGGGATATTGGTGATATCACTCGGGCAGTTAATGCTTATGAGCAATGTCTTAAGCTAGATCCTGAATCTCGAAATGCCGGTCAGAACCGCTTGCTTGCAATGAATTACATAGATGAAGGCCATGCTGATAATCTTTTTGAAGCTCACAGGTTGCAATTTTTTTCCTTTGAACTTCTAATATTCACTTTGAGAACTTGCTTGGATTTGGAAGACAATGAAGATTTGAATTTATGCAAAGGATCCTTTGATGGTGTACTTCAGGACTGGGGTAGGCGCTTCATGGGATTATATTCACAGTACTCAACATGGGATAACCCTAAAGATCCTGAGCGACCTCTTGTCATAGGATATGTATCTCCTGATTATTTTACCCATTCTGTGTCTTACTTCATAGAGACTCCCCTTCTCTATCATGACTACGCCAATTATAAAGTCTCAGTTTATTCGGCAGTTGTCAAGGCAGATGCAAAAACAATAAAATTTAGAGAGAGAGTTCTACAGAAGGGTGGGATTTGGAGAGATATATATGGGATTGATGAAAAGAGAGTTGCCAACATGGTCAGAGAGGACCAAGTTGACATTCTGGTAGAACTTACTGGTCATACTGCAAACAACAAGTTGGGAATGATGGCATGTCGGCCTGCACCAGTTCAGGTGACTTGGATTGGTTATCCTAATACAACCGGCTTACCTGCAATTGATTATAGAATAACTGATTCGCTGGCAGACCCTCCTGAAGCAAAGCAGAAGCATGTTGAGGAGTTAGTTCGATTACCAGAATGCTTCCTTTGTTACACACCTTCACTTGAGGCTGGGCCTGTTTGTCCTACTCCGGCTCTTTCTAATGGCTTCATTACGTTTGGTAGCTTTAACAATCTTGCCAAGATCACACCTAAAGTATTGCAAGTTTGGGCAAGGATATTACGTCAAGTTCCAAATTCACGCCTTGTGGTAAAATGTAAACCATTTTGTTGTGATAGTGTAAGACAGAGATTTCTCACAACGTTGGAGCAGTTAGGTGTGGAACCACTATGTGTTGATCTTCTACCACTAATTCTTCTTAACCATGACCATATGCAAGCATATTCTCTTATGGATATCAGTTTGGACACATTTCCTTATGCTGGAACAACCACAACATGTGAATCTTTATACATGGGAGTTCCATGCGTCACTATGGCTGGTTCCGTACATGCACACAATGTTGGTGTTAGCCTTCTTAGCAAAGTTGGTCTGGAGCGTTTGGTTGCGAGGAATGAAGACGAATACGTGCAATTGGCTCGGCAGCTGGCCTCTGACATACCAGCCCTACAAAAATTGAGGATGAGTCTTAGAGAACTCATGTCCAAGTCTCCTCTCTGTGATGGAGCGAATTTTATCCTTGGCCTGGAATCAACATTTAGGAACATGTGGCGCAGATATTGTAAAGGAGATGTTCCCTCTTTAAAGCGCATGGAATTGTTGCAGCAATCAGCCCCACTGAGTGACCCGTCTGGTAAGACATCAGAGCCAACAGGGATAGCCAACTCAAGAGAGAGCAGCCCAGGATCTGTCAAGACCAGTGAATTAAATTCATCACAACCATCTAAGATCAATATCCACAGCTGCGGAAAAATGGGGGGGCATTGA 2916 0.4126 MAWMENSAGNGKEKELMGENGFLKVTQPSISSSGSGGDIDPVRERGEGKDNFSYANILRSRNKFGDALVLYDRVLENDGGNVEALIGKGICLQMQNMGRLAFDSFAEAIKLDPRNACALTHCGILYKEEGRLMEAAESYQKALQVDPSYKAASECLAIVLTDIGTNIKLSGNTQEGIQKYYEALKIDSHYAPAYYNLGVVYSEMMQYDMALSFYEKAASERPMYAEAYCNMGVIYKNRGDLEAAIACYESELPFTVVIYGLVMLCGRCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDKAIVFYELAFHFNPHCAEACNNLGVIYKDKDNLDKAVECYQLALSIKPNFSQSLNNLGVIYTVQGKIDAAASMIEKAIIANQTYAEAYNNLGVLYRDIGDITRAVNAYEQCLKLDPESRNAGQNRLLAMNYIDEGHADNLFEAHRLQFFSFELLIFTLRTCLDLEDNEDLNLCKGSFDGVLQDWGRRFMGLYSQYSTWDNPKDPERPLVIGYVSPDYFTHSVSYFIETPLLYHDYANYKVSVYSAVVKADAKTIKFRERVLQKGGIWRDIYGIDEKRVANMVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPAIDYRITDSLADPPEAKQKHVEELVRLPECFLCYTPSLEAGPVCPTPALSNGFITFGSFNNLAKITPKVLQVWARILRQVPNSRLVVKCKPFCCDSVRQRFLTTLEQLGVEPLCVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLERLVARNEDEYVQLARQLASDIPALQKLRMSLRELMSKSPLCDGANFILGLESTFRNMWRRYCKGDVPSLKRMELLQQSAPLSDPSGKTSEPTGIANSRESSPGSVKTSELNSSQPSKINIHSCGKMGGH 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0906 971 SMART sel1 317 348 IPR006597 -
Lele06g0906 971 SMART sel1 419 450 IPR006597 -
Lele06g0906 971 SMART sel1 191 222 IPR006597 -
Lele06g0906 971 SMART sel1 351 382 IPR006597 -
Lele06g0906 971 SMART sel1 225 254 IPR006597 -
Lele06g0906 971 Gene3D Tetratricopeptide repeat domain 160 227 IPR011990 GO:0005515
Lele06g0906 971 Gene3D Tetratricopeptide repeat domain 319 388 IPR011990 GO:0005515
Lele06g0906 971 ProSiteProfiles TPR repeat profile. 116 149 IPR019734 GO:0005515
Lele06g0906 971 Pfam Glycosyl transferase family 41 536 692 IPR029489 -
Lele06g0906 971 Pfam Glycosyl transferase family 41 709 888 IPR029489 -
Lele06g0906 971 ProSiteProfiles TPR repeat region circular profile. 191 222 - -
Lele06g0906 971 Pfam Tetratricopeptide repeat 192 250 - -
Lele06g0906 971 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 39 912 - -
Lele06g0906 971 Gene3D Tetratricopeptide repeat domain 389 479 IPR011990 GO:0005515
Lele06g0906 971 SUPERFAMILY TPR-like 388 855 IPR011990 GO:0005515
Lele06g0906 971 Pfam Tetratricopeptide repeat 419 451 IPR001440 GO:0005515
Lele06g0906 971 Pfam Tetratricopeptide repeat 351 384 IPR001440 GO:0005515
Lele06g0906 971 ProSiteProfiles TPR repeat profile. 191 224 IPR019734 GO:0005515
Lele06g0906 971 Pfam Tetratricopeptide repeat 387 414 - -
Lele06g0906 971 SMART tpr_5 385 418 IPR019734 GO:0005515
Lele06g0906 971 SMART tpr_5 317 350 IPR019734 GO:0005515
Lele06g0906 971 SMART tpr_5 419 452 IPR019734 GO:0005515
Lele06g0906 971 SMART tpr_5 48 81 IPR019734 GO:0005515
Lele06g0906 971 SMART tpr_5 225 258 IPR019734 GO:0005515
Lele06g0906 971 SMART tpr_5 157 190 IPR019734 GO:0005515
Lele06g0906 971 SMART tpr_5 82 115 IPR019734 GO:0005515
Lele06g0906 971 SMART tpr_5 351 384 IPR019734 GO:0005515
Lele06g0906 971 SMART tpr_5 116 149 IPR019734 GO:0005515
Lele06g0906 971 SMART tpr_5 283 316 IPR019734 GO:0005515
Lele06g0906 971 SMART tpr_5 191 224 IPR019734 GO:0005515
Lele06g0906 971 MobiDBLite consensus disorder prediction 920 962 - -
Lele06g0906 971 ProSiteProfiles TPR repeat region circular profile. 419 451 - -
Lele06g0906 971 ProSiteProfiles TPR repeat region circular profile. 351 383 - -
Lele06g0906 971 Gene3D - 527 697 - -
Lele06g0906 971 Gene3D Tetratricopeptide repeat domain 46 159 IPR011990 GO:0005515
Lele06g0906 971 Gene3D Tetratricopeptide repeat domain 228 318 IPR011990 GO:0005515
Lele06g0906 971 ProSiteProfiles TPR repeat profile. 351 384 IPR019734 GO:0005515
Lele06g0906 971 MobiDBLite consensus disorder prediction 25 46 - -
Lele06g0906 971 MobiDBLite consensus disorder prediction 920 971 - -
Lele06g0906 971 ProSiteProfiles TPR repeat region circular profile. 116 148 - -
Lele06g0906 971 ProSiteProfiles TPR repeat profile. 317 350 IPR019734 GO:0005515
Lele06g0906 971 ProSiteProfiles TPR repeat profile. 419 452 IPR019734 GO:0005515
Lele06g0906 971 SUPERFAMILY TPR-like 282 454 IPR011990 GO:0005515
Lele06g0906 971 SUPERFAMILY TPR-like 50 290 IPR011990 GO:0005515
Lele06g0906 971 Pfam Tetratricopeptide repeat 317 347 IPR019734 GO:0005515
Lele06g0906 971 Pfam Tetratricopeptide repeat 123 148 IPR019734 GO:0005515
Lele06g0906 971 Gene3D Glycogen Phosphorylase B; 698 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0906 Lele-ChrLele06 5630985 5639014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0906 306 944 Glycosyltransferase AT3G11540 62.693 0.0 830
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0906 06 5630985 5639014 Lele06g0906 06 5630985 5639014 ECH
Lele06g0906 06 5630985 5639014 Lele07g1083 07 6534455 6542911 hybridization
Lele06g0906 06 5630985 5639014 Lele08g0895 08 5651370 5664366 hybridization