Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0660 ATGGAAGCGAATGGTCACCGCGAGGAGGAACGGCCGGTGCAAGCCCAGTGCCTCATGAGCTATGTGGACGAAGGCAGTATCGAGAGTCACAGATACTACCTTTCTCGAAAGACTGTGCTCGAGATGCTCAGAGACAGAGGCTTTTCTATTCCCTCCTCTGAAATCGACGTCTCTCTTGCCGAATTTCGAGCCATTCACGGCCAATCCCCCGACATTGAACGCCTCCGCTTCTCCGCCACTCATGCCTCCGACTCTTCCAAGCGGGTAACTCTCTTAAGCCTCTCACTAGTTAGGGATGGCAATGTTGCTAAAAGTGATACTACGGTCATAAGTAGACATGCTTCTTCCATAGTATGCTGTGTATTTCACCAGATTTTGGTCACTTTCTGCTGGCCTGGTGTTGTAAAAGTTAATGTGATCCGGAGCCTTGCTGGTCAGCTTTTTAACACAGACACTTTATCTGGGATGATATTGATAGTACAGGACCAAATTACTAGCCAGGCCTTGAAAGCTTTAGAAGTTTTCAAACAAATTCAAGATCACTTGCTTGTTAACATTACAAAGCATGTCTTGAAGCCAAAGCACGAGGTGCTGACTGATCGACAGAAGCAAGAGCTTTTGAAGCAATACAATTTAGAAGAAAAGCAGCTTCCCCGCATGCTGCAGAAAGATGCCATTGCGCGGTACTATGGACTGGAGAGGGGACAAGTGGTTAAAGTCACCTATAGTGGTGATATCTCCCAGATGCATTCTACACTTAGAGATGCAGATGCAATTCTGAATGCTTGA 789 0.4651 MEANGHREEERPVQAQCLMSYVDEGSIESHRYYLSRKTVLEMLRDRGFSIPSSEIDVSLAEFRAIHGQSPDIERLRFSATHASDSSKRVTLLSLSLVRDGNVAKSDTTVISRHASSIVCCVFHQILVTFCWPGVVKVNVIRSLAGQLFNTDTLSGMILIVQDQITSQALKALEVFKQIQDHLLVNITKHVLKPKHEVLTDRQKQELLKQYNLEEKQLPRMLQKDAIARYYGLERGQVVKVTYSGDISQMHSTLRDADAILNA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0660 262 Pfam RNA polymerase Rpb5, N-terminal domain 28 145 IPR005571 GO:0003677|GO:0003899|GO:0006351
Lele06g0660 262 Gene3D - 182 254 IPR035913 -
Lele06g0660 262 Pfam RNA polymerase Rpb5, C-terminal domain 184 251 IPR000783 GO:0003677|GO:0003899|GO:0006351
Lele06g0660 262 SUPERFAMILY RPB5-like RNA polymerase subunit 182 254 IPR035913 -
Lele06g0660 262 PIRSF RPB5 93 256 IPR014381 GO:0003899
Lele06g0660 262 PIRSF RPB5 21 94 IPR014381 GO:0003899
Lele06g0660 262 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 27 248 IPR014381 GO:0003899
Lele06g0660 262 Gene3D - 22 181 IPR036710 GO:0003677|GO:0003899|GO:0006351
Lele06g0660 262 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC1 182 256 - -
Lele06g0660 262 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 26 182 IPR036710 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0660 Lele-ChrLele06 3955194 3958123 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0660 06 3955194 3958123 Lele06g0660 06 3955194 3958123 ECH
Lele06g0660 06 3955194 3958123 Lele07g0851 07 4920709 4923451 hybridization