Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0650 ATGAACGGTGGCCCATCTGGCTTTACTAATGCTCCCGTCACAAGGACTTTCATTATCGCCTCAGCGCTTTTCACTATCTTCTTCGTGATCCAAGGTCGTTATAACAGACTGGGATTGTCTTATCAGGACATATTTGGAAAGCTTCGCCTCTGGAAATTGATTGTGTCCATATTTGCTTTTTCATCAACTCCAGAGTTGATGTTTGGACTGTTTCTGCTATACTATTTCAGGGTCTTCGAGAGACAGATAGGTTCCAATAAATACTCAGTCTTTATTACATTCTCCATATTAATGTCACTGCTGTTTGAGGTGTTTTCTATATCAATCTTAAAAGATCCTGCGGCAATCTTGGTCACCCCTGGACCTTATGGTCTTATATTTGCTTCATTCGTACCCTTTTTCTTTGACATTCCCGTTTCAACACGGTTTCGTGTAGCTGGTTTCCACTTCTCTGACAAATCATTCATATATCTAGCTGGTCTACAGCTTCTTTTATCGTCATGGAAAAGGTCTCTCTTGCCAGGGATGTGTGGTATCCTTGCTGGTTCCTTGTACCGTTTAAATGTCTTCTACATACGCAAAGCCAAGTTCCCAGAGTTTATTGCCTCCTTCTTTTCAAGGATTTCTTTGCCATCCATGGGAAGCGCACGTTCAGCATCAACAAGGAATGTAGTGGGGAATATGCCATCCTATCCAACTCGACAGATGGAGAGGAACTACCCTGCTCCAGTGCAATCTGCCCCACAACCATCGGAGGACTCTATTTCTACACTTGTCTCCATGGGCTTTGATAGGGATTCTGCTAGACAGGCACTAGTGCAGGCCAGGAACGATGTTAATGTGGCCACAAACATCCTGCTGGAGGCACAATCCCACCAATAA 882 0.4388 MNGGPSGFTNAPVTRTFIIASALFTIFFVIQGRYNRLGLSYQDIFGKLRLWKLIVSIFAFSSTPELMFGLFLLYYFRVFERQIGSNKYSVFITFSILMSLLFEVFSISILKDPAAILVTPGPYGLIFASFVPFFFDIPVSTRFRVAGFHFSDKSFIYLAGLQLLLSSWKRSLLPGMCGILAGSLYRLNVFYIRKAKFPEFIASFFSRISLPSMGSARSASTRNVVGNMPSYPTRQMERNYPAPVQSAPQPSEDSISTLVSMGFDRDSARQALVQARNDVNVATNILLEAQSHQ 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0650 293 SUPERFAMILY UBA-like 244 289 IPR009060 GO:0005515
Lele06g0650 293 SMART uba_6 251 288 IPR015940 -
Lele06g0650 293 Pfam UBA/TS-N domain 251 286 IPR015940 -
Lele06g0650 293 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 249 289 IPR015940 -
Lele06g0650 293 PANTHER RHOMBOID-RELATED PROTEIN 3 237 - -
Lele06g0650 293 SUPERFAMILY Rhomboid-like 11 187 IPR035952 -
Lele06g0650 293 Gene3D - 9 189 IPR035952 -
Lele06g0650 293 Gene3D - 215 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0650 Lele-ChrLele06 3873410 3876651 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0650 06 3873410 3876651 Lele06g0650 06 3873410 3876651 ECH
Lele06g0650 06 3873410 3876651 Lele08g0647 08 3922219 3925455 hybridization