Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g2697 ATGAAAATGGGGTGGGAGAGTGGAGTGAGAGAGTTGAAGCCACTGATCCACTTGTTGTTGCCGTTCTTCATACATGGCATCGCCGAGGAAATGCCGGTTTCTGTTCTGGTTGACTTCACCACTTCCGCTTTGTGCCCTCCTCCCTCTTCTTCCTGCTCCAAATCTCTCTACATCGTCGCTCTCCAACAAACCGTGGTGGGAGTATTCAAGATGGTGGTGTTGCCGGTGGTGGGTCAGCTAGCGGACGAGTATGGCCGCAAACCCATGCTGCTCCTCACCTTTTCTGCCTCCATCGTCCCTTTTGCTGTAATATCGTGGAAACAGTCGGAGGAATATGTGTATGCCTACTACGCTCTACGCACCGTTTCATCCATTATCAGTCAAGGCAGTACTTACTGCGTCATGTTTGCTTATGTGGCAGATATTGTTGGGGAAGAGAAAAGAGCAGCAGTGTTTGGATGGATAACTGGTCTTCACTCTGCTTCCCAATTCATGGGTGAAGCCTTAACTCGCTCCCTCCCACAGCACTACATTTTTGGGGTTTCGACGACACTTCTGATATTTTGCTCATCGTATATGCTAATGTTCCTTTCTGAAACTCTGAGGTTACCTGCAACAAAGGAGCATTCCTCCCTTCGCTTCCCTAACCCCATCCATATTCTTCGCCAACGATTCACATCTATGACCAATGCTGCTGAACTTGTCATTTCCAGTCCCACATTGCGAGGCATATCCCTCGTCTCTTTCTTCTACGAGTTGGGAATGTCTGGCACAGTCGCCATCTTGCTCTACTACCTGAAAGCGGTTTTCGGTTTTGACAAAAATCAGTTCACAGAAATTCAAATGTTGGTTGGCATTGGTTCAATCTTCTCCCAGATTGTGTTGGCTCCTCTTATTAATCCATTGGTTGGAGAGAAAGTGATACTCTGCTTTGCCTTGCTTGCTTCCATAGCATACGCACTGCTCTATGGATTGGCATGGGCTCCTTGGGTAGCATACTTCAGTGCCTCTCTTGGTGTCCTCTTTGTCCTTGTGAAACCATTTACTTATGCTATTATTTCAAAAGCATCAAGCTCAGCCAATCAGGGAAAAGCACAAGGGTTTATTGCTGGGGTCGAATCCATGGCTCATTTGCTATCTCCTATGATCATGAGTTCATTGACATCGTGGTTTTTATCTAGCAGTGCTCCTTTTGATTGCAAAGGCTTTGGCTTAATATGTGCTTCCATAATCATGATGATTTCTCTTTGTTTTGCTTGCCTATTGGAGCCTCGATCTCACTCAATTGATAACGTCCAAGACGACCTTGAAACTCCTTTTTTGAAGGAGAGGTTTGAACCGAATCAAAACATGGACGTTTTATCGATTTCTACTGCATTAAATGAACCTATAGCCCTTTCCATTATCAAATCTCATAGAATCCAACTTCGCCACCTTCCCTTAAACCCCATATTGCGCTACTCATCAAATAACACAATCCATTTCAAGCTTTCTTCTTCTTCTTCTTCGTCTTCCTGTTTCTGTAAGTGTTTCTGTTCTAGAATAGCTGTAACTTCAGGAACTACTTTCACTCCCTTAGCTTCTTCCACCACTGAGAACTGCCATTGGATAGTAATCATGGAAAAGCCTCCACAAGGGGTTGATTCCAAGCAGCAAGTCGTTGATTATTATGTTCAAACTCTGCAAAAACTTATTGGCAGTGAGAAAGAGGCTCAAATGTGTATTTACGATGCTTCGGTGGATACCCACTACGGTTTTTGTTGTGACATCGATGAAGAAACTTCTTCCCAGCTAGCTTGTTTACCTGGGGTCATTTCGGTTAAGCCTGATCCAGATTTCAGTTCTCCAGAAAAGGATTATAGGTCATCAAATGGGAAGGAAGATAATCTGTCAAAACTACAAACTGGAGCCACTTTGTTGTTCCCTTCTGGGAATTCAATGCATTGGCTCGTTCGAATGGATAAACCTGGGGTTGCGGTGGTTACAAAGGCCCAAGTCGTGGATTTTTATGCTCAAATTCTAACCAAGGTCATGGGAAACGAGAAGGATGCACAAATGTGTATATACCATGTTTCTTGGAAAACCAACTTTGGCTTTTGTTGTGAACTTGATGAGGATTGTGCACGAGAACTTGCTGGAAACAGTTTGGATGCGCTGAACTCTTCTGTAGCAAGTGAGGCAACTCCTTTGAAAACAAAAAAGCTTTTTGTGACAGGCCTATCATTTTATACATCTGAGAAAACCTTACGCGCTGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATTATGGATAAAATTTCTAAAAGGTCCAAGGGTTATGCATTTGTGGAATACACATCAGAGGAGGCTGCAGCTGCAGCATTGAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTTGTGGATGTTGCCAAGCCTGGCCCGCCAAAATATAATAGGGGCCGTGCCAGACCTGTAGCTTGA 2478 0.4399 MKMGWESGVRELKPLIHLLLPFFIHGIAEEMPVSVLVDFTTSALCPPPSSSCSKSLYIVALQQTVVGVFKMVVLPVVGQLADEYGRKPMLLLTFSASIVPFAVISWKQSEEYVYAYYALRTVSSIISQGSTYCVMFAYVADIVGEEKRAAVFGWITGLHSASQFMGEALTRSLPQHYIFGVSTTLLIFCSSYMLMFLSETLRLPATKEHSSLRFPNPIHILRQRFTSMTNAAELVISSPTLRGISLVSFFYELGMSGTVAILLYYLKAVFGFDKNQFTEIQMLVGIGSIFSQIVLAPLINPLVGEKVILCFALLASIAYALLYGLAWAPWVAYFSASLGVLFVLVKPFTYAIISKASSSANQGKAQGFIAGVESMAHLLSPMIMSSLTSWFLSSSAPFDCKGFGLICASIIMMISLCFACLLEPRSHSIDNVQDDLETPFLKERFEPNQNMDVLSISTALNEPIALSIIKSHRIQLRHLPLNPILRYSSNNTIHFKLSSSSSSSSCFCKCFCSRIAVTSGTTFTPLASSTTENCHWIVIMEKPPQGVDSKQQVVDYYVQTLQKLIGSEKEAQMCIYDASVDTHYGFCCDIDEETSSQLACLPGVISVKPDPDFSSPEKDYRSSNGKEDNLSKLQTGATLLFPSGNSMHWLVRMDKPGVAVVTKAQVVDFYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCARELAGNSLDALNSSVASEATPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTSEEAAAAALKEMNGKIINGWMIVVDVAKPGPPKYNRGRARPVA 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g2697 825 SMART rrm1_1 734 807 IPR000504 GO:0003723
Lele05g2697 825 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 735 801 IPR000504 GO:0003723
Lele05g2697 825 SUPERFAMILY RNA-binding domain, RBD 725 821 IPR035979 GO:0003676
Lele05g2697 825 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 733 811 IPR000504 GO:0003723
Lele05g2697 825 Gene3D MFS general substrate transporter like domains 14 423 IPR036259 -
Lele05g2697 825 ProSiteProfiles Major facilitator superfamily (MFS) profile. 18 427 IPR020846 GO:0022857
Lele05g2697 825 ProSitePatterns Sugar transport proteins signature 1. 77 93 IPR005829 GO:0016020|GO:0022857|GO:0055085
Lele05g2697 825 MobiDBLite consensus disorder prediction 610 629 - -
Lele05g2697 825 Gene3D - 717 824 IPR012677 -
Lele05g2697 825 CDD MFS_SLC46_TetA_like 18 421 - -
Lele05g2697 825 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 637 802 IPR039206 GO:0016554
Lele05g2697 825 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 519 614 IPR037045 -
Lele05g2697 825 MobiDBLite consensus disorder prediction 612 626 - -
Lele05g2697 825 SUPERFAMILY MFS general substrate transporter 52 425 IPR036259 -
Lele05g2697 825 Pfam Major Facilitator Superfamily 59 381 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g2697 Lele-ChrLele05 42838777 42847998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g2697 6 403 Organic Solute Cotransporters AT2G16990 30.166 2.57e-51 184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g2697 05 42838777 42847998 Lele05g2697 05 42838777 42847998 ECH
Lele05g2697 05 42838777 42847998 Lele07g2721 07 32711312 32716603 hybridization