Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1137 ATGCGGAGTTTTCTTCCAATGTTATCGGCTTTCGCCACCATTTTTGTGCCTGTATCAGTAGTTCACGGTGGGTTGTCTGGGGGTTTCCTCCCTCTGGAACGGGCAATTCCTCTTAGTCGGCGAGTGGAGCTGGAATCACTCAGAGCTCGCGACCGAGCTCGGCATGCTAGAATCTTGCAAGGTGTAGCAGGTGGTGTTGTCGACTTCTCAGTCAAAGGGTTATCTGATCCTTCTACTATTGGGCTGTATTATACAAAAGTGAAGTTGGGCTCTCCTCCAAGACAATTCAACGTCCAGATTGATACCGGAAGCGACATATTGTGGGTTAATTGCAACACTTGCGGCGATTGCCCTCAATCTAGTGAGTTGGAGATTCAGCTCAACTTCTTTGATACAGCCAGCTCATCCACATCTGCGCTGATATCCTGCTCAGATTCAATATGCTCTTCTTCAATTCCAAGTGCCGCAACTGAATGCACCCCTCAGATTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGAAGTGGGACATCAGGGTATTATGTTTCTGATGCGATGTATTTTGACATGATCCTTGGACAGTCTATGCTGGCTAATTCTTCAGCTAAAGTTGTTTTTGGGTGTAGTACCTATCAGTCTGGAGATTTGACTAAGTCAGATAAAGCTGTGGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCCGTTATTTCACAATTATCATCACGAGGCATGACCCCCAAAGTATTTTCTCATTGTTTAAAAGGAGATGGTAACGGAGGAGGCATACTAGTTCTTGGCGAGATTTTGGAGCCAAGTCTTGTTTATAGTCCACTTGTCCCGTCAGAGCCTCATTACAACTTAAATCTTCAGAGTATTGGTGTTAATGGACGAATTCTCCCTATTAATCCAGCAGTTTTTGCAACATCTAACAACCGAGGAACTATAGTTGATACGGGTACAACCTTGTCATACCTTGTTCAAGAAGCATATGATCCATTGGTCAATGCTGTAACTACCATTGTTTCACAGTTTGCCACTCCCATTATTTCAAAAGGAAGCCAGTGTTATTTGGCCTCAGCCAGTGTAGGTGATATATTTCCTTCAGTCAGTTTGATCTTTGCTGGTGGAGCATCCATGGTTTTAGAACCAGAACAGTACCTCTTACATTCTGATTTCATTGATGGTGTTCCAGAGTGGTGTATTGGTTTCCAGAAAGTGCAGGAGGGAGTTTCAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTCTACGACTTAGCTCATCAACGGATTGGATGGGCTAACTATGATTGTTCTCTGGCTGTGAATGTCTCTGTGACTACAGCCAAGGATGAGTACGTTAGTGCGGGACAGGTGAGCGTGAGCAGTTCAGAGCTAGACATTCTCGCCAAGTTGCTGCCTTTAAGCATTGCAGCTTTCTTTATGCACATAGCAGTTTTCTGGGGTTCCCAAATTTTGTGA 1491 0.4406 MRSFLPMLSAFATIFVPVSVVHGGLSGGFLPLERAIPLSRRVELESLRARDRARHARILQGVAGGVVDFSVKGLSDPSTIGLYYTKVKLGSPPRQFNVQIDTGSDILWVNCNTCGDCPQSSELEIQLNFFDTASSSTSALISCSDSICSSSIPSAATECTPQINQCSYTFQYGDGSGTSGYYVSDAMYFDMILGQSMLANSSAKVVFGCSTYQSGDLTKSDKAVDGIFGFGPGALSVISQLSSRGMTPKVFSHCLKGDGNGGGILVLGEILEPSLVYSPLVPSEPHYNLNLQSIGVNGRILPINPAVFATSNNRGTIVDTGTTLSYLVQEAYDPLVNAVTTIVSQFATPIISKGSQCYLASASVGDIFPSVSLIFAGGASMVLEPEQYLLHSDFIDGVPEWCIGFQKVQEGVSILGDLVLKDKIFVYDLAHQRIGWANYDCSLAVNVSVTTAKDEYVSAGQVSVSSSELDILAKLLPLSIAAFFMHIAVFWGSQIL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1137 496 Gene3D Acid Proteases 270 447 IPR021109 -
Lele05g1137 496 Pfam Xylanase inhibitor C-terminal 286 437 IPR032799 -
Lele05g1137 496 SUPERFAMILY Acid proteases 81 443 IPR021109 -
Lele05g1137 496 ProSiteProfiles Peptidase family A1 domain profile. 83 437 IPR033121 -
Lele05g1137 496 Pfam Xylanase inhibitor N-terminal 83 268 IPR032861 -
Lele05g1137 496 CDD pepsin_A_like_plant 83 441 IPR034161 -
Lele05g1137 496 FunFam Aspartic proteinase-like protein 2 270 448 - -
Lele05g1137 496 PANTHER ASPARTYL PROTEASES 28 435 IPR001461 GO:0004190|GO:0006508
Lele05g1137 496 FunFam Aspartic proteinase-like protein 2 66 269 - -
Lele05g1137 496 Gene3D Acid Proteases 68 269 IPR021109 -
Lele05g1137 496 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Lele05g1137 496 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Lele05g1137 496 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1137 Lele-ChrLele05 7100955 7105378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1137 80 442 Miscellaneous Gene Families AT1G44130 26.963 7.21e-40 147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1137 05 7100955 7105378 Lele13g1714 13 25666901 25671060 CCT
Lele05g1137 05 7100955 7105378 Lele14g1658 14 24063950 24067817 CCT
Lele05g1137 05 7100955 7105378 Lele16g0705 16 3972280 3976150 CCT
Lele05g1137 05 7100955 7105378 Lele05g1137 05 7100955 7105378 ECH
Lele05g1137 05 7100955 7105378 Lele07g1180 07 7125059 7129507 hybridization
Lele05g1137 05 7100955 7105378 Lele08g0987 08 6263255 6267838 hybridization