Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1048 ATGGCATGGATGGAAAACAGTGCAGGGAATGGGAAAGAAAAGGAATTGATGAATGGTTTCTTGAAAGTGCCACAACCTTCTATTAGTAGTAGCGGGTCTGGGGAGGATATTGATCCAGTACATGACAGAGGTGAAGGGAAAGATAATCTTTCGTATGCCAACATCCTACGTTCAAGGAACAAGTTTGGTGATGCTCTTGTTTTATATGATCGTGTTCTTGAGAATGATAGTGGAAATGTAGAGGCTTTAATAGGAAAAGGGATATGCCTGCAAATGCAGAACATGGGGAGGCTTGCTTTTGACAGTTTTGCTGAGGCAATCAAGTTGGATCCTCATAATGCTTGCGCACTTACACATTGTGGTATTTTGTACAAGGAAGAAGGTTGTTTGATGGAGGCAGCCGAGTCGTATCAGAAGGCTTTACAAGTGGATCCTTCATACAAAGCAGCTTCTGAATGCCTCGCCATTGTTTTAACAGATATTGGTACCAACATAAAGCTTGCAGGAAACACTCAAGAGGGAATTCAAAAATATTATGAAGCTCTCAAAATAGATTCTCACTATGCTCCGGCATATTATAACCTTGGCGTTGTCTATTCTGAAATGATGCAATATGACATGGCCCTTAGTTTCTATGAGAAGGCTGCATCAGAGAGGCCCATGTATGCGGAAGCATATTGCAATATGGGTGTGATTTATAAAAATCGTGGTGATTTGGAAGCAGCTATTGCCTGCTATGAGAGGTGCTTAGCTGTTTCACCAAACTTTGAGATTGCAAAGAATAATATGGCTATAGCCTTGACTGATTTGGGAACAAAGGTTAAATTGGAAGGGGACATCAATCAAGGTGTGGCTTATTATAAGAAAGCCTTGTATTATAATTGGCATTATGCTGATGCTATGTATAATCTCGGGGTTGCTTATGGTGAGATGCTCAAGTTTGACATGGCTATTGTATCGTATGAACTTGCTTTTCACTTCAATCCTCATTGTGCGGAAGCATGTAACAATCTAGGGGTTATATATAAAGATAAAGACAACCTTGATAAAGCTGTAGAGTGTTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCTCAATCACTGAATAATCTTGGTGTTGTCTATACTGTCCAGGGTAAAATTGATGCTGCTGCAAGTATGATTGAGAAAGCTATCATTGCAAATCCAACATATGCAGAAGCATACAATAATTTAGGAGTTCTTTATAGGGATATTGGTGATATCACTCTGGCAGTTAATGCTTATGAGCAGTGTCTTAAGATAGATCCCGACTCTCGGAATGCTGGCCAGAACCGCTTGCTTGCAATGAATTACATAGATGAAGGCCATGATGATAAACTTTTTGAAGCTCACAGGGACTGGGGTAGGCGCTTCATGAGATTATATTCACAGTACTCAACATGGGATAACCCTAAAGATCCTGAGCGACCTCTTGTCATAGGATATGTATCACCTGATTATTTTACCCATTCCGTGTCTTACTTCATAGAGGCTCCCCTTGTCTATCATGACTACACCAATTATAAAGTCATAGTTTATTCGGCAGTTGTCAAGGCAGATGCAAAAACAATAAAGTTTAGAGAGAGAGTTCTACAGAAGGGTGGGATTTGGAGAGATATATATGGGATTGATGAAAAGAGAGTTGCCAACATGGTCAGAGAGGACCAGGTTGACATTCTGGTTGAACTTACTGGTCATACTGCAAACAACAAGTTGGGAATGATGGCATGTCGGCCTGCACCAGTTCAGGTGACTTGGATTGGTTATCCTAATACAACCGGCTTACCAGCAATTGATTATAGAATAACTGATTCGCTGGCAGACCCTCCCCAAACAAAGCAGAAGCATGTTGAGGAGTTAGTTCGATTGCCAGAATGCTTCCTTTGTTATTCACCTTCACTTGAGGCTGGGCCTGTTTGTCCTACTCCTGCTCTTTCTAATGGCTTCATTACGTTTGGTAGCTTTAACAATCTTGCCAAGATCACACCTAAAGTATTGCAAGTTTGGGCAAGGATATTACGTCAAGTTCCAAATTCACGCCTTGTGGTAAAATGTAAACCATTTTGTTGTGATAGTGTAAGACAGAGATTTCTCACAACGTTGGAGCAGTTAGGTGTGGAACCACTATGTGTTGATCTTCTACCCCTAATTCTTCTTAACCATGACCATATGCAAGCATATTCTCTTATGGATATCAGTTTGGACACATTTCCTTATGCTGGAACAACCACAACATGTGAATCTTTATACATGGGAGTTCCGTGCGTCACTATGGCTGGTTCTGTACATGCACACAATGTTGGTGTTAGCCTTCTTAGCAAAGTTGGTCTGGAGCGTTTGGTTGCCAGAAATGAAGATGAATACGTCCAATTGGCTCTGCAGCTGGCCTCCGACATACCAGCCCTACAAAAATTGAGGATGAGTCTTAGAGAACTCATGTCCAAGTCTCCTCTTTGTGATGGAGCGAATTTTATCCTTGGCCTCGAATCAACATTTAGGAACATGTGGCGCAGATATTGTAAAGGAGATGTTCCATCTTTAAAGCGCATGGAATTGTTGCAGCAATCAGCCGCAATGAGTGATCCATCTAATAAGACATCAGAGCCAACAAGGATAGCCAACTCAAGAGAGAGCAGCCCAGGATCTGTTAAGACCAGTGAATTAAATTCATCACAACCATCTAAGCTCAATAGCCACAGCTGCGAAGAAAATGGGGGTTCGTTGAATCACTCTAGTAAACAAGGAAAGGTGGGTTCTAGTTAA 2787 0.4126 MAWMENSAGNGKEKELMNGFLKVPQPSISSSGSGEDIDPVHDRGEGKDNLSYANILRSRNKFGDALVLYDRVLENDSGNVEALIGKGICLQMQNMGRLAFDSFAEAIKLDPHNACALTHCGILYKEEGCLMEAAESYQKALQVDPSYKAASECLAIVLTDIGTNIKLAGNTQEGIQKYYEALKIDSHYAPAYYNLGVVYSEMMQYDMALSFYEKAASERPMYAEAYCNMGVIYKNRGDLEAAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVSYELAFHFNPHCAEACNNLGVIYKDKDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKIDAAASMIEKAIIANPTYAEAYNNLGVLYRDIGDITLAVNAYEQCLKIDPDSRNAGQNRLLAMNYIDEGHDDKLFEAHRDWGRRFMRLYSQYSTWDNPKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYTNYKVIVYSAVVKADAKTIKFRERVLQKGGIWRDIYGIDEKRVANMVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPAIDYRITDSLADPPQTKQKHVEELVRLPECFLCYSPSLEAGPVCPTPALSNGFITFGSFNNLAKITPKVLQVWARILRQVPNSRLVVKCKPFCCDSVRQRFLTTLEQLGVEPLCVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLSKVGLERLVARNEDEYVQLALQLASDIPALQKLRMSLRELMSKSPLCDGANFILGLESTFRNMWRRYCKGDVPSLKRMELLQQSAAMSDPSNKTSEPTRIANSRESSPGSVKTSELNSSQPSKLNSHSCEENGGSLNHSSKQGKVGSS 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1048 928 ProSiteProfiles TPR repeat profile. 366 399 IPR019734 GO:0005515
Lele05g1048 928 SUPERFAMILY TPR-like 49 272 IPR011990 GO:0005515
Lele05g1048 928 MobiDBLite consensus disorder prediction 863 928 - -
Lele05g1048 928 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY 264 462 - -
Lele05g1048 928 Pfam Glycosyl transferase family 41 653 832 IPR029489 -
Lele05g1048 928 Pfam Glycosyl transferase family 41 480 636 IPR029489 -
Lele05g1048 928 Pfam Tetratricopeptide repeat 368 393 - -
Lele05g1048 928 MobiDBLite consensus disorder prediction 24 44 - -
Lele05g1048 928 Gene3D Tetratricopeptide repeat domain 158 270 IPR011990 GO:0005515
Lele05g1048 928 ProSiteProfiles TPR repeat profile. 189 222 IPR019734 GO:0005515
Lele05g1048 928 Gene3D Glycogen Phosphorylase B; 641 827 - -
Lele05g1048 928 ProSiteProfiles TPR repeat region circular profile. 400 432 - -
Lele05g1048 928 ProSiteProfiles TPR repeat profile. 332 365 IPR019734 GO:0005515
Lele05g1048 928 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Lele05g1048 928 Gene3D Tetratricopeptide repeat domain 372 488 IPR011990 GO:0005515
Lele05g1048 928 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 37 865 - -
Lele05g1048 928 ProSiteProfiles TPR repeat region circular profile. 332 364 - -
Lele05g1048 928 SMART tpr_5 155 188 IPR019734 GO:0005515
Lele05g1048 928 SMART tpr_5 400 433 IPR019734 GO:0005515
Lele05g1048 928 SMART tpr_5 366 399 IPR019734 GO:0005515
Lele05g1048 928 SMART tpr_5 114 147 IPR019734 GO:0005515
Lele05g1048 928 SMART tpr_5 223 256 IPR019734 GO:0005515
Lele05g1048 928 SMART tpr_5 264 297 IPR019734 GO:0005515
Lele05g1048 928 SMART tpr_5 80 113 IPR019734 GO:0005515
Lele05g1048 928 SMART tpr_5 189 222 IPR019734 GO:0005515
Lele05g1048 928 SMART tpr_5 46 79 IPR019734 GO:0005515
Lele05g1048 928 SMART tpr_5 298 331 IPR019734 GO:0005515
Lele05g1048 928 SMART tpr_5 332 365 IPR019734 GO:0005515
Lele05g1048 928 SMART sel1 400 431 IPR006597 -
Lele05g1048 928 SMART sel1 189 220 IPR006597 -
Lele05g1048 928 SMART sel1 223 254 IPR006597 -
Lele05g1048 928 SMART sel1 332 363 IPR006597 -
Lele05g1048 928 MobiDBLite consensus disorder prediction 864 928 - -
Lele05g1048 928 Gene3D - 489 640 - -
Lele05g1048 928 Gene3D Tetratricopeptide repeat domain 44 157 IPR011990 GO:0005515
Lele05g1048 928 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Lele05g1048 928 ProSiteProfiles TPR repeat region circular profile. 223 255 - -
Lele05g1048 928 ProSiteProfiles TPR repeat profile. 400 433 IPR019734 GO:0005515
Lele05g1048 928 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Lele05g1048 928 Gene3D Tetratricopeptide repeat domain 271 371 IPR011990 GO:0005515
Lele05g1048 928 Pfam Tetratricopeptide repeat 223 256 IPR001440 GO:0005515
Lele05g1048 928 Pfam Tetratricopeptide repeat 332 365 IPR001440 GO:0005515
Lele05g1048 928 Pfam Tetratricopeptide repeat 189 220 IPR001440 GO:0005515
Lele05g1048 928 Pfam Tetratricopeptide repeat 400 432 IPR001440 GO:0005515
Lele05g1048 928 ProSiteProfiles TPR repeat region circular profile. 189 220 - -
Lele05g1048 928 SUPERFAMILY TPR-like 264 799 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1048 Lele-ChrLele05 6507171 6515598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele05g1048 208 908 Glycosyltransferase AT3G11540 62.340 0.0 885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1048 05 6507171 6515598 Lele05g1048 05 6507171 6515598 ECH
Lele05g1048 05 6507171 6515598 Lele07g1083 07 6534455 6542911 hybridization
Lele05g1048 05 6507171 6515598 Lele08g0895 08 5651370 5664366 hybridization