Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g1172 ATGAAGAAATCAGCAACTCTTGTGGTCTGCCTCATCCTCTCATTGCTTCCCTCTATTGCCAATGCTGCCAAACATGGCGGCAGCTACAACATCACTCGCGTTCTGGCCAAGAATCCTGACTTCTCCACCTTTAACCACTACCTCTCCGCCACCCATCTGGCAGATGAGATCAACCGCCGCCGCACCATCACCGTGCTCGCCGTCGACAATGCTGGCATGTCCGATCTCCTGTCCAGACACTTCAACATCTACACTCTCAAGAACGTCCTCTCCCTCCATGTCCTCGCCGATTACTTCGGTGCCAAGAAACTCCACCAGATCTCCAACCGCACCACCTTAGTTTCCTCCCTCTTTCAGGCCACCGGAGACGCCGCCGGAACCACCGGCTATATCAACATCACCGACATTAGAGGTGGGAAAGTAGGGTTTGGAGCTGAAGACAACGATGGACTTCATTCCTTCTACGTAAAATCAGTCTTCGAAATCCCTTACGTCATCTCTGTTCTTCAGATCAGTCATCCTATTTCTTCTCCAGATGCCGAAGCTCCAACCTCTGGCCCAGGCCTCGTTAATCTCACCATTATCATGGCCAAACAAGGTTGCAAGGGCTTTGCCGATCTCCTCCGTCCCTCAGAAGCTCTTCCGGCTTTCGAACACAACGTCGCCCAAGGCTTAACGGTGTTTTGCCCCACCGACGATGCCCTCACCTCCTTCCTTCCCAAATACAAGAACCTCACAGACTCCGAGAAAGAATCGTTACTGTTATACCACGGCGTTCCCGAGTATGAAACCCTACAAATGTTGAGATCTCATAATGGGATGATGAACACTTTGGCCACTGAAGGAGCCAACAAGTTTGATTTTTCAGTGAAGAGTGATGGAGAAGATGTGATGTTAAAGACCAAAGTTGTGACTTCCAACATTGTCGGCACGTTGATTGATCAAGATCCTGTTGTCGTGTACAAGATTGATAAGTTTTTGTTGCCCAGAGAATTGTTTAAGGTGGCGCCGGCGTTGACTCCGGCCGAGTCTCCTAAACCGGCGAAGAAGAAGAAGAAGAAGAAGGGGGCTTCATCGGATGAAGAAGAAGCCGATTCGCCCGTGGATTCACCGGATTCCTTTTCAGATGATCAGAAAGCCGCCGACGATGATGATAACGGTTCAACTGGGTTAAACAATGGCTTCAGGTTTATCTCACTGTTGGTAACTTTGGTCATGGGATTTTTGGTTCTATAA 1236 0.4943 MKKSATLVVCLILSLLPSIANAAKHGGSYNITRVLAKNPDFSTFNHYLSATHLADEINRRRTITVLAVDNAGMSDLLSRHFNIYTLKNVLSLHVLADYFGAKKLHQISNRTTLVSSLFQATGDAAGTTGYINITDIRGGKVGFGAEDNDGLHSFYVKSVFEIPYVISVLQISHPISSPDAEAPTSGPGLVNLTIIMAKQGCKGFADLLRPSEALPAFEHNVAQGLTVFCPTDDALTSFLPKYKNLTDSEKESLLLYHGVPEYETLQMLRSHNGMMNTLATEGANKFDFSVKSDGEDVMLKTKVVTSNIVGTLIDQDPVVVYKIDKFLLPRELFKVAPALTPAESPKPAKKKKKKKGASSDEEEADSPVDSPDSFSDDQKAADDDDNGSTGLNNGFRFISLLVTLVMGFLVL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g1172 411 MobiDBLite consensus disorder prediction 341 390 - -
Lele04g1172 411 FunFam Fasciclin-like arabinogalactan protein 10 181 330 - -
Lele04g1172 411 SUPERFAMILY FAS1 domain 194 329 IPR036378 -
Lele04g1172 411 SUPERFAMILY FAS1 domain 34 147 IPR036378 -
Lele04g1172 411 SMART fasc_3 226 330 IPR000782 -
Lele04g1172 411 FunFam Fasciclin-like arabinogalactan protein 2 27 168 - -
Lele04g1172 411 Gene3D FAS1 domain 28 149 IPR036378 -
Lele04g1172 411 ProSiteProfiles FAS1/BIgH3 domain profile. 28 170 IPR000782 -
Lele04g1172 411 ProSiteProfiles FAS1/BIgH3 domain profile. 188 327 IPR000782 -
Lele04g1172 411 Pfam Fasciclin domain 39 112 IPR000782 -
Lele04g1172 411 Pfam Fasciclin domain 201 329 IPR000782 -
Lele04g1172 411 Gene3D FAS1 domain 192 330 IPR036378 -
Lele04g1172 411 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 387 IPR033254 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g1172 Lele-ChrLele04 11016271 11018332 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0585 01 3446320 3448942 Lele04g1172 04 11016271 11018332 hybridization
Lele02g0578 02 3462813 3464127 Lele04g1172 04 11016271 11018332 hybridization