Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele04g0342 ATGCGATCGCTACTCTTCTACGTCGTGCAGAACCCTTCGCTCACTCCGTCCTTCTTCAATTTACCAAAAGTAAGATTAGCCGCCACTATCCGGTTCTGTAACTTCTCTTCATCAATGGCATCTACAGCTTCGGACTGTAACTCAACTAGTTCGCTGGTTTTATGCGGGAAGTCACCAGCCGAGAATGAAATTGCTAAAACAATTAAGACGAATAATACTTTGAAGCTTCCTGACAGCAGCGAAATTTCGATTATTCTGCGGTCTGAATTGGATAATAAACCTCTTAAAGAAGATCCCTTTGGAATTGATTTATTCATGAACTCGCTTTCTACTCATACTTTTGGCCGGTTTCTCATTTGGTCCCCACGGTTGTCGTCAACGCATGATGTGGTATCACACAACTTCTGTGAGCTTCCCATTGGTGCCGTTTGTGTTACTGATGTTCAGACCAAAGGACGAGGTCGGTCAAAGAATGTGTGGGAGTCTCCGTTGGGCTGCCTCCTATTTTCTTTCACTCTACAAATGGAGGATGGACGGGTTGTTCCTTTACTGCAGTATGTAGTTTCCCTGGCTATCACGGAGGCAATAAAGGATATATGCGACAAAAATGGCTTACCCAGTGTTGATGTAAAAATTAAGTGGCCAAATGATCTCTACTTAAATGGCCTTAAAGTTGGAGGCATTTTATGCACCTCAACCTATAAATCTAAGAAGTTTAATGTTAGTGCAGGTATTGGCTTGAATGTCAACAATGAGAAGCCAACAACATGCTTAGATACGGCTCTAAGAGAGTTGCCCATGAAAGCATACCGATTTCGAAGAGAAGATGTTCTGGCAGCCTTCTTGAACAAATTTGAGAAATTTTATGATCTTTTTGTGAATCAAGGATTCCAAACCCTGGAGCAGCTATATTACAAGACATGGTTGCACAGTGGACAGAGAGTTATTGTGCAGGAAAAGAATGAGGACGAAGTAATTGAACATGTGGTAACCATTCAGGGTTTAACATCCTCTGGTTACTTGTTGGCCATTGGCGATGATAATCAAATGTGTGAGCTCCATCCTGATGGTAATAGCTTTGATTTTTTCAAAGGACTGGTTAGAAGGAAACTTTAG 1116 0.4176 MRSLLFYVVQNPSLTPSFFNLPKVRLAATIRFCNFSSSMASTASDCNSTSSLVLCGKSPAENEIAKTIKTNNTLKLPDSSEISIILRSELDNKPLKEDPFGIDLFMNSLSTHTFGRFLIWSPRLSSTHDVVSHNFCELPIGAVCVTDVQTKGRGRSKNVWESPLGCLLFSFTLQMEDGRVVPLLQYVVSLAITEAIKDICDKNGLPSVDVKIKWPNDLYLNGLKVGGILCTSTYKSKKFNVSAGIGLNVNNEKPTTCLDTALRELPMKAYRFRREDVLAAFLNKFEKFYDLFVNQGFQTLEQLYYKTWLHSGQRVIVQEKNEDEVIEHVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSFDFFKGLVRRKL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele04g0342 371 CDD BPL 117 292 IPR004408 GO:0004077|GO:0036211
Lele04g0342 371 Pfam Biotin/lipoate A/B protein ligase family 121 248 IPR004143 GO:0036211
Lele04g0342 371 TIGRFAM birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 121 345 IPR004408 GO:0004077|GO:0036211
Lele04g0342 371 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 103 293 IPR004143 GO:0036211
Lele04g0342 371 SUPERFAMILY Class II aaRS and biotin synthetases 104 308 IPR045864 -
Lele04g0342 371 PANTHER BIOTIN PROTEIN LIGASE 50 370 - -
Lele04g0342 371 Gene3D Bira Bifunctional Protein; Domain 2 106 308 IPR045864 -
Lele04g0342 371 Pfam Biotin protein ligase C terminal domain 310 365 IPR003142 GO:0036211
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele04g0342 Lele-ChrLele04 2000171 2003961 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele04g0342 04 2000171 2003961 Lele04g0342 04 2000171 2003961 ECH
Lele02g0333 02 1883797 1887600 Lele04g0342 04 2000171 2003961 hybridization