Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1379 ATGATCCGAGCAGCATTTGAGTTACCCTTAAACCAACACCACATTAGAAAACCAACATCTGGTCACAATGTCCTTTTTGTTCGCCGAGAAGATTATTTAGCTCATTCTCGCCATGGTGGCAAAGTCAAATCAAGGCTTACCAATGAGGCTGAAGTATTTTACTCCTTGAAGATGTGGGCATCTAGCTATGAAGGATGCAAAATCAACCTTGTGAATGGATTGTTTGCACACATGTCTATGAAAGAACAGGTTCAAGCCATTCAAGGTGCACCAGTAATCATCGGCACTCATGGTGCCGGTCGGACTCATATCGTATCCGCATTGCCTAAAACTGTGATTCTCAAGATAATTAGCAGCATGTTCAGCCTGCAAAACCAAGAGCAAGCTCTGAAATCAGCAGAACTTGGCATTTCCAGAATCGCGTTTAGTCCAGAGGGATTTAACCACAATTACTACCACCCCTTGCACCTATCAATACTCAAAGGTGATTGGGAATCTGCAAGGGCGTTCTTCGAGCGTGACCCGAATGCAGTGACAGCAAAGATCACCACAGTTGCTAGGACTGCACTACATGTGGCGGCTGTAGCAGGGCAGTGGAAACTTGTGGAAAAGTCGGTGCAGCAAATGCTCATAGAAGATTCCCTCCTTTTGCCTATGCAATTACCTCTTCTACAAGTAAAGAGTTGGTATGGTACCTTGCTTTGGTTACTACAGATGAGACCTGCCTGTCCATTCTCCGGTCCTTCTGCTAGTCGTCTCGTTGCCTTGCTTACTGCTTCAGGATTTCATGTTATGCTCCTTTCTAATGCGAAGATATCACTTTGTTTCTTCTCCAGCGCTATCCCAACTTGGCCACTATGGCAGATTCAAATGGGAGTGTTATATTCATTGTTCTGTCAAAAATGCCATCAGACTTCCAAAGTGGAACCGAGAGGAGATTCGAAGGACCTCCATGAGGCATCAAGCAAAGGATTCATCTGGAAAACCATTGAGAAGCTGGGAACGAGGATTAGCAAATACGAACCCCTTGCCATGCGCATGCTCTTCAAAGTTCCAAGCTGCTTCATCTCCAAAGTCTCGTCGGCTTCGTATTCCACTCACCCACGCTACCTCCCTCACCAACTGATTACCCTCTCCACCAAAATCTCAACTTTCCAATCTCTACTTCAATTCCACGCAATTACCGTCACTTCAGGTAACTCCAACAATGTCTTCGTCGCTTCCAAGCTCATATCTCTCTACGATTCCTTCAGCCACCCCACTTTCTCCACCATGGTATTTCATTCACTTGATGATTCCAAGGACATCTTTGCTTGGAACTCCATTGTCAAATGCCATTTCTCCCATGGCAATTTTTCTCAAGCTCTTAGCTTCTACTCTCAAATGCGAGATTCTTCTGTTTTGCCTAATAGCTTCACTATCCCTATGGTTGTTTCTGCGTGCGCAGAGCTGATGTTGCTAGACTATGGAAAAAATGTCCATGGCTTGGCTGCCAAGCTTGGTCTTTTTGCTGATGGGTCTGCAGTGGGTTCATCTTTTGTGTCCTTGTATTCCAGGTGTGGCCAACTGAATGATGCATCTCATGTGTTTGAGGAAATTCCTGTGAAAGATGTGGTTGCTTGGACTACGCTTGTAATAGGGTATGTGCAAAATGAGGAGAGTGAGAAGGGGTTGAGTTATCTTTGTGAGATGCATAGGATTGATGAAGTTGACGCGAAGCCCAACTTTAGAACATTGGAGGGTGGATTTCAAGCTTGTGGGAATCTGGGTGCTCTTTCAGAAGGCAGATGTTTACACGGGTTGGTATTAAAAAATGGAATTGGATGTTCAGAAGTCATACAATCTTCAATTTTGTCCATGTATTGCAAATGTGGGACTCCCCAAGAAGCTTATCAATCCTTTTGTCAATTAATTAAGAAAGATATACTGTCATGGACATCAGTCATTGGTAATTTTGCAAGGTTTGGGTTGATGACCGAATGTATAAGGTTTTTCTGTGAAATGCAAAAAAAGCAAATATGTCCTGATGGAATTGTCATTAGCTGCATCCTTTTAGGTTTCAGTAATTCCATGAATATATCTGAAGCAAAAGCGTTTCATGGGTTAATCATAAGGAGATATTATGCATCTGATGAGATAGTTCACAATGCGTTATTGTCTATGTACTGCAAATCTGGAATGTTAAGTTTAGCTGAGAGGCTTTTCCACAGGGATAAACAGAGCCGAGAGTGCTGGAACTCAATGGTTATTGGTTATGGTAGAATAGGTAGGAGTGTGAAGTGTATTGAAATCTTCAGGGAGATGCAATATTTAGGGATTCATTCCGACTCAAACAGCTTAGTTTCTGCAATTGCTTCTTGTACTCAGCTAGGAGCAACCAAAATAGGAAGGTCAATCCATTGCAATGTAATAAAGAATTTTATGGTTGACAATATCTCGGTGGCCAATTCACTAGTAGACATGTATGGAAAATGTGGAAAGATAGCTTTTGCTTGGAGAATATTTGATAGGATGGAGAGCGATGTTATCTCATGGAACACCCTGCTATCATCTCTTGTCCAAGCTATGCATCACCAAGAGGCTATAGACCTATATAATAAAATGGTTGTAGAAGACCAAAAGCCAAATACAGCCACCCTAGTTGTTATTCTTTCGGCTTGTTCTCACCTTGCATCTCTGGAGGAAGGAGTAAGAGTTCACCACTATCTAAATGAAAGAGGTTTCAAACTCAATATCCCACTTGGCACAGCTTTGGTCGATATGTATGCAAAGTGTGGGCAACTAGAGAAGTCGAGACAAATGTTTGACTTAATGGAAGAGAAGGATGTAGTTTGCTGGAATGCCATGATTTCAGGTTATGGAATGAATGGATATGCAGAATCTGCTGAGGATATATTTCAAAAAATGGAAAAAGCAAATGTTAAACCCAATGAAATTACCTTCCTTGCTCTGCTCACAGCATGTGCCCATGCAGGACTTGTTGAAGAAGGAAAGCACCTATTCGCTAGGATGCAGAATTACTCTATGAAACCCAATTTGAAGCACTACACTTGTATGGTAGATCTTCTAGGGAGGTCAGGTAATTTGCAAGAAGCGGAAGCTCTAGTTCTGTCCATGCCTATCACTCCAGATGGTGGTGTTTGGGGTGCTATATTAAGTGCTTGTAAAACTCACAATCAAATTGAGATGGGAATTAGGATTGCCCAGTATGCTGTTGCCTCAGATCCAGTAAATGATGGATACTATGTAACTCTGGCCAATATGTATAGCTCCATTGGGAAGTGGGAAGAAGCAGAAAATGTCAGAAGGATGATGATAGAGAGATGCTCAATAGGAAAGAAAGCTGGTTGGAGTATGCTCTAA 3363 0.4234 MIRAAFELPLNQHHIRKPTSGHNVLFVRREDYLAHSRHGGKVKSRLTNEAEVFYSLKMWASSYEGCKINLVNGLFAHMSMKEQVQAIQGAPVIIGTHGAGRTHIVSALPKTVILKIISSMFSLQNQEQALKSAELGISRIAFSPEGFNHNYYHPLHLSILKGDWESARAFFERDPNAVTAKITTVARTALHVAAVAGQWKLVEKSVQQMLIEDSLLLPMQLPLLQVKSWYGTLLWLLQMRPACPFSGPSASRLVALLTASGFHVMLLSNAKISLCFFSSAIPTWPLWQIQMGVLYSLFCQKCHQTSKVEPRGDSKDLHEASSKGFIWKTIEKLGTRISKYEPLAMRMLFKVPSCFISKVSSASYSTHPRYLPHQLITLSTKISTFQSLLQFHAITVTSGNSNNVFVASKLISLYDSFSHPTFSTMVFHSLDDSKDIFAWNSIVKCHFSHGNFSQALSFYSQMRDSSVLPNSFTIPMVVSACAELMLLDYGKNVHGLAAKLGLFADGSAVGSSFVSLYSRCGQLNDASHVFEEIPVKDVVAWTTLVIGYVQNEESEKGLSYLCEMHRIDEVDAKPNFRTLEGGFQACGNLGALSEGRCLHGLVLKNGIGCSEVIQSSILSMYCKCGTPQEAYQSFCQLIKKDILSWTSVIGNFARFGLMTECIRFFCEMQKKQICPDGIVISCILLGFSNSMNISEAKAFHGLIIRRYYASDEIVHNALLSMYCKSGMLSLAERLFHRDKQSRECWNSMVIGYGRIGRSVKCIEIFREMQYLGIHSDSNSLVSAIASCTQLGATKIGRSIHCNVIKNFMVDNISVANSLVDMYGKCGKIAFAWRIFDRMESDVISWNTLLSSLVQAMHHQEAIDLYNKMVVEDQKPNTATLVVILSACSHLASLEEGVRVHHYLNERGFKLNIPLGTALVDMYAKCGQLEKSRQMFDLMEEKDVVCWNAMISGYGMNGYAESAEDIFQKMEKANVKPNEITFLALLTACAHAGLVEEGKHLFARMQNYSMKPNLKHYTCMVDLLGRSGNLQEAEALVLSMPITPDGGVWGAILSACKTHNQIEMGIRIAQYAVASDPVNDGYYVTLANMYSSIGKWEEAENVRRMMIERCSIGKKAGWSML 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1379 1120 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 887 1119 - -
Lele03g1379 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 741 775 IPR002885 -
Lele03g1379 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 977 1011 IPR002885 -
Lele03g1379 1120 TIGRFAM PPR: pentatricopeptide repeat domain 944 978 IPR002885 -
Lele03g1379 1120 TIGRFAM PPR: pentatricopeptide repeat domain 438 470 IPR002885 -
Lele03g1379 1120 TIGRFAM PPR: pentatricopeptide repeat domain 843 877 IPR002885 -
Lele03g1379 1120 TIGRFAM PPR: pentatricopeptide repeat domain 744 769 IPR002885 -
Lele03g1379 1120 TIGRFAM PPR: pentatricopeptide repeat domain 979 1012 IPR002885 -
Lele03g1379 1120 TIGRFAM PPR: pentatricopeptide repeat domain 644 676 IPR002885 -
Lele03g1379 1120 TIGRFAM PPR: pentatricopeptide repeat domain 916 944 IPR002885 -
Lele03g1379 1120 TIGRFAM PPR: pentatricopeptide repeat domain 714 737 IPR002885 -
Lele03g1379 1120 Pfam PPR repeat 714 737 IPR002885 -
Lele03g1379 1120 Pfam PPR repeat 744 773 IPR002885 -
Lele03g1379 1120 Pfam PPR repeat 816 840 IPR002885 -
Lele03g1379 1120 Pfam PPR repeat 615 642 IPR002885 -
Lele03g1379 1120 Pfam PPR repeat 539 566 IPR002885 -
Lele03g1379 1120 Pfam PPR repeat 644 672 IPR002885 -
Lele03g1379 1120 Pfam PPR repeat 1015 1039 IPR002885 -
Lele03g1379 1120 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 913 1120 - -
Lele03g1379 1120 Gene3D Tetratricopeptide repeat domain 747 904 IPR011990 GO:0005515
Lele03g1379 1120 Gene3D Tetratricopeptide repeat domain 958 1119 IPR011990 GO:0005515
Lele03g1379 1120 Gene3D Tetratricopeptide repeat domain 567 746 IPR011990 GO:0005515
Lele03g1379 1120 SUPERFAMILY TPR-like 815 1106 IPR011990 GO:0005515
Lele03g1379 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 841 875 IPR002885 -
Lele03g1379 1120 Pfam PPR repeat family 841 888 IPR002885 -
Lele03g1379 1120 Pfam PPR repeat family 434 482 IPR002885 -
Lele03g1379 1120 Pfam PPR repeat family 941 989 IPR002885 -
Lele03g1379 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 942 976 IPR002885 -
Lele03g1379 1120 FunFam Pentatricopeptide repeat-containing protein At1g26900, mitochondrial 796 902 - -
Lele03g1379 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Lele03g1379 1120 FunFam Pentatricopeptide repeat-containing protein 504 593 - -
Lele03g1379 1120 Pfam E motif 1058 1116 IPR046848 -
Lele03g1379 1120 Pfam Glycosyltransferase 61 30 114 IPR007657 GO:0016757
Lele03g1379 1120 Gene3D Tetratricopeptide repeat domain 369 490 IPR011990 GO:0005515
Lele03g1379 1120 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1379 Lele-ChrLele03 8340310 8349454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1379 390 545 Glycoside Hydrolase AT3G49170 26.829 1.78e-08 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1379 03 8340310 8349454 Lele03g1379 03 8340310 8349454 ECH
Lele01g1367 01 8418514 8420147 Lele03g1379 03 8340310 8349454 hybridization
Lele02g1645 02 20275670 20277919 Lele03g1379 03 8340310 8349454 hybridization