LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele03g0533	ATGACGGTACGCGGATCAATTTCTCTTCACATGAAGGGTTCGCTTTATTATGTATATCGTAGTTCTCTGCCTCGTGTCTTCCAAGCATCAGAGCATTTATTTGGTGCAAAAGGATCTGAAGTATTCTATACTGAGTGCCTCGGTACGAAGCTATTGAGAAAACGTAATATACCAGAAGAGAGATATAGTAATGCTTTTCTTGGATTCGGTCCTGAAGATTCCCACTTCGCAGTTGAACTTACTTACAATTATGGAGTGAATAAGTATGACAATGGAACTGGTTTTTGTCATTTTGGCATCGCAGTTGAAGATGTAAAAGCTCATATTTCCTCAAAAAGACCTGTCAAAGGTGGCAGTACAGTCATAGCTTTTGTTGAAGATCCTGATGGCTATAAGTTTGAGCTTCTTGAGAGAGGTCCCAGTCCTGAACCATTATGCCAAGTAATGCTTCGAGTAGGGGACCTTGATCGTGCCATAGCCTTCTATCAAAAGGCTTTTGGCATGCAACTTCTCAGCAAAAGGGAAAATCCTGAGTACAAGTATACAATAGCCATGATGAGATATGGTCCTGAAGATAAGAATGCGGTTCTAGAACTGACATATAACTATGGGGTCACCAATTATGACAAAGGAAATGGTTATGCCCAGATTGCAATAGGCACCAACGATGTTTGTAAGACTGCAGAAGCAATAAAACTTTATGGAGGGAAGATTATCCGTGAACCTGGGCCTCACAGTTTAAAAAAGAAATGTCGGACTCCAACGCTGCGTTTTGAAGAACGATGTGTACAGTCCACACAAAGGCAACCAACGCTGCGTTTTGAAGAACGATGTGTACAGTCCACACGAAGGCACCCACCTTCTCTGGTCTCTCACTCCCGTCGCACTGGCTCTACTCAGATCCGTCTCCCTGTCATTCGGCGAATAGATTCTGGCAGAATCGCCATGGCCATGGCGATTAGGTCTTTTTTCTCTCTTCTGTTGTTTATCTCGTGTGCCCACTTTAGCTTTTCGCTTTATGAAGATCAAGTTGGCCTTATGGATTGGCACCAGCAGTACATTGGGAAAGTAAAACATGCTGTGTTTCATACTCAAAAGACTGGACGAAAGCGTGTTTTGGTGTCCACTGAAGAGAATGTTCTTGCTTCTCTTGACCTTCGTCATGGAGAAATTTTTTGGAGGCATGTTCTTGGGACCAACGATGTAATCTATGGACTTGACATTGCCCTGGGAAAATATGTTATTACTCTTTCCTCTGATGGTAGTATATTGAGAGCATGGAACCTTCCTGATGGCCAGATGGTTTGGGAGTCTTTCCTTCCTGGCTCAAAGGCTTCAAAGTCAATATTAACTATTCCTAAAAATTTGAAGGCAGACAGGGATGATTTGATCCTTGTTTTTGGTAATGGATGTCTTCATGCTGTTTCCGGCATAGATGGTGAGATACTTTGGAAGAAAGATTTTGCAAGAGAAAGCATTGATGTCCAGCATCTTATTCAGTCTCCTCATGATGATATAATCTATGTAGCTGGTTTTTCTGGCTCTTCAAAATTTTTTGTGTATCAGTTCAAAGCCAAGAATGGAGACTTGTTAAAGCATACTGACGCAGGAGTTCCATGTGGCACTTTTGGGGAATTATTATCAGTCTCCAATGATATACTTGTGATATTGGATGATATCAGGTCAAAGATAGTAACAATAAACATCAGGAATGGAGATATTAACTACAGCCAGAAGCATATTTCAGAGTTCATTGAGGATTCATCTGGACAAGCAGTAATTTTACCATCAAAGCTTCCGGGAATGTTTGCTTTAAATCTTGATTCCCATATTATCCTTCTTAAATTGACAAATGAAGGTGAGTTGGTGGTGGTGGAGAAAATAAACAATGTTGCAGCTATTAGTGATGCTCTATCAATTTCAGAGGGCCGACATGCTTTTGCATTTGTTCAACATGGAGACAATAAAGTTCACCTTTATGTAAAGGATGTCAACGCTAATGATTTGAACGGTGACTTTCTTAAAGAAAGCATAGTAATAGACAATCAAAGAGGGTATGTTGAGAAAATTTATATAAACAACTATGTCAGGACAGACAAATCAAATGGGTTTAGGGCATTGATGGTAATGGAGGATCATTCACTTATATTAGTACAACAAGGAGAGATTGTCTGGAGTAGAGAGGATGGTCTTGCTGCAGTTGTAGATGTAACAACATCAGAACTACCTGTGGAGAAGGAAGGTGTATCTGTAGCAAAAGTTGAACAGAATCTCTTTGAATGGCTCAAGGGACACATGCTGAAGCTCAAAGGAACCTTAATGATTGCAAGCCCGGAGGATGTAGCAGCAATCCAAGCAATGAGGTTGAGGAGTTCTGGGAAAAGCAAAATGACTCGTGATCATAATGGTTTCCGTAAGTTACTTATAGTGCTTACCAGGGCAGGAAAAGTTTTTGCCTTGCACACTGGAGATGGACATGTAGTTTGGTCTGTGCTATTACGCAATCTACGTAAATCTGAAGCATGTGGACATCCAGTTGGGATTAATATTTATCAGTGGCAGGTTCCACATCACCATGCATTGGATGAGAATCCTTCTGTCCTTGTAGTTGGGCGATGTGGCTCAAGTTTGTCTGCACCAGCTGTTCTTTCTTTTATTGATGCATACACGGGAATGGAACTCAATGCTTTGAGTCTTTGTCATACCATTGCTCAAGTTATTCCACTGCCTTACACCGATTCAAAAGAACAGCATCTCCATCTAATAATAGATGTTGACCAGAAAGCTCATTTATACCCCAGAACACCTGAAGCTATTGAAATTCTGCAACATGGGTTTTCAAATGTGTACTGGTACTCAGTTGAGGTGGATAATGGTATTATTAGAGGTCATGCCTTAAAGAGTAATTGCATTGGTGAAGTAGTGGATGAATATTGCTTTTTCTTCAGGGACTTATGGTCTGTTGTATTCCCATCTGAATCTGAAAAGATCATAGCAACTATGACGAGAAAATCAAATGAGGTGGTTCATACTCAAGCAAAAGTCATGGCTGACCAAGACGTTATGTACAAGTATATATCAAGTAATCTGCTTTTTGTTGCAAATGTGGCACCAAAAGCCAGATGTGAAATTGGAACAGCAACACCAGAGGAGGCATGGCTGGTTGTCTATATCATTGATACTGTAACTGGCCGCATATTGCATCGCATGACTCATCAGGGTTGTCAGGGTCCTGTTCATGCTGTATTTAGCGAAAACTGGGTTGTGTACCATTATTTTAATCTCAGAGCACACAGATATGAGATGTCAGTTGTTGAAGTCTATGATCAATCTCGAGCGGATAACAAAGACGTTTGGAAGCTTATTCTTGGAAAGCATAATCTTACATCTCCTGTCACTTCATACTCTCGACCAGAAGTCATAGCTAAATCACAATCGTACTTCTTTACCGATTCTGTGAAAGCAATGGAAGTGACTTCAACCGTCAAGGGCATAACCTCCCAACAACTTCTTATTGGAACAATTGGTGATCAGGTTTTGGCCCTTGATAAACGTTATTTGGATCCTAGGCGAACACTCAATCCCTCGCAAGCTGAGAAAGAAGAAGGAATTATTCCTCTTACTGATTCCTTACCGGTTATTTCTCAGTCTTACATTACGCATTCCCTTAAAGTGGAAGGTCTCCGACGAATAATAACAGTACCTGCCAAGTTGGAGTCGACATCACTGGTCTTTGCCTATGGAGTAGATCTATTCTTTACTCGGATAGCACCTTCAAGGACTTATGATTCTTTAACCGAAGATTTCAGCTACGCGCTACTTCTCATCACTATTGTTGCACTTGTAGCAGCAATTTTTGTTACTTGGGTATTATCAGAGAGGAAAGAACTACAAGATAAGTGGAGGTGA	3909	0.408	MTVRGSISLHMKGSLYYVYRSSLPRVFQASEHLFGAKGSEVFYTECLGTKLLRKRNIPEERYSNAFLGFGPEDSHFAVELTYNYGVNKYDNGTGFCHFGIAVEDVKAHISSKRPVKGGSTVIAFVEDPDGYKFELLERGPSPEPLCQVMLRVGDLDRAIAFYQKAFGMQLLSKRENPEYKYTIAMMRYGPEDKNAVLELTYNYGVTNYDKGNGYAQIAIGTNDVCKTAEAIKLYGGKIIREPGPHSLKKKCRTPTLRFEERCVQSTQRQPTLRFEERCVQSTRRHPPSLVSHSRRTGSTQIRLPVIRRIDSGRIAMAMAIRSFFSLLLFISCAHFSFSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVLVSTEENVLASLDLRHGEIFWRHVLGTNDVIYGLDIALGKYVITLSSDGSILRAWNLPDGQMVWESFLPGSKASKSILTIPKNLKADRDDLILVFGNGCLHAVSGIDGEILWKKDFARESIDVQHLIQSPHDDIIYVAGFSGSSKFFVYQFKAKNGDLLKHTDAGVPCGTFGELLSVSNDILVILDDIRSKIVTINIRNGDINYSQKHISEFIEDSSGQAVILPSKLPGMFALNLDSHIILLKLTNEGELVVVEKINNVAAISDALSISEGRHAFAFVQHGDNKVHLYVKDVNANDLNGDFLKESIVIDNQRGYVEKIYINNYVRTDKSNGFRALMVMEDHSLILVQQGEIVWSREDGLAAVVDVTTSELPVEKEGVSVAKVEQNLFEWLKGHMLKLKGTLMIASPEDVAAIQAMRLRSSGKSKMTRDHNGFRKLLIVLTRAGKVFALHTGDGHVVWSVLLRNLRKSEACGHPVGINIYQWQVPHHHALDENPSVLVVGRCGSSLSAPAVLSFIDAYTGMELNALSLCHTIAQVIPLPYTDSKEQHLHLIIDVDQKAHLYPRTPEAIEILQHGFSNVYWYSVEVDNGIIRGHALKSNCIGEVVDEYCFFFRDLWSVVFPSESEKIIATMTRKSNEVVHTQAKVMADQDVMYKYISSNLLFVANVAPKARCEIGTATPEEAWLVVYIIDTVTGRILHRMTHQGCQGPVHAVFSENWVVYHYFNLRAHRYEMSVVEVYDQSRADNKDVWKLILGKHNLTSPVTSYSRPEVIAKSQSYFFTDSVKAMEVTSTVKGITSQQLLIGTIGDQVLALDKRYLDPRRTLNPSQAEKEEGIIPLTDSLPVISQSYITHSLKVEGLRRIITVPAKLESTSLVFAYGVDLFFTRIAPSRTYDSLTEDFSYALLLITIVALVAAIFVTWVLSERKELQDKWR	1302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele03g0533	1302	Gene3D	-	344	661	IPR015943	GO:0005515
	Lele03g0533	1302	Pfam	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	147	245	IPR004360	-
	Lele03g0533	1302	ProSitePatterns	Glyoxalase I signature 1.	147	168	IPR018146	GO:0004462\|GO:0046872
	Lele03g0533	1302	SUPERFAMILY	Quinoprotein alcohol dehydrogenase-like	370	902	IPR011047	-
	Lele03g0533	1302	FunFam	Os05g0230600 protein	347	655	-	-
	Lele03g0533	1302	SUPERFAMILY	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	145	246	IPR029068	-
	Lele03g0533	1302	ProSiteProfiles	Vicinal oxygen chelate (VOC) domain profile.	144	268	IPR037523	-
	Lele03g0533	1302	Gene3D	-	141	257	IPR029068	-
	Lele03g0533	1302	Gene3D	-	36	140	IPR029068	-
	Lele03g0533	1302	Pfam	PQQ-like domain	368	574	IPR002372	-
	Lele03g0533	1302	TIGRFAM	glyox_I: lactoylglutathione lyase	41	147	IPR004361	GO:0004462\|GO:0046872
	Lele03g0533	1302	TIGRFAM	glyox_I: lactoylglutathione lyase	145	250	IPR004361	GO:0004462\|GO:0046872
	Lele03g0533	1302	PANTHER	UNCHARACTERIZED	318	1302	IPR026895	GO:0072546
	Lele03g0533	1302	ProSiteProfiles	Vicinal oxygen chelate (VOC) domain profile.	25	138	IPR037523	-
	Lele03g0533	1302	Pfam	ER membrane protein complex subunit 1, C-terminal	1084	1301	IPR011678	-
	Lele03g0533	1302	SUPERFAMILY	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	38	143	IPR029068	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele03g0533	Lele-ChrLele03	3141686	3152686	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele03g0533	37	137	Calmodulin-binding Proteins	AT1G08110	29.630	5.52e-08	53.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele01g0525	01	3117658	3125850	Lele03g0533	03	3141686	3152686	hybridization
	Lele02g0512	02	3092450	3099401	Lele03g0533	03	3141686	3152686	hybridization