Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0471 ATGTGTAGCACTGGGAGATGGATGGATGCTGAGAAACTATTATCTGACGTGCTTCGTAAGGGCTGTTCTCCTAGCGTCGTCACATTCAATATTTTGATTAATTTTCTGTGCCGTAAAGGTTTACTGGGTAGAGCCATTGATGTCTTGGAGAAGATGCCAAAGCATGGTTGCACTCCTAATTCCCTGAGTTACAATCCATTGCTTCATGGCTTTTGCAAAGAGAAAAAGATGGACAGAGCAATTGAATATTTGGAAATAATGGTAAGTAGGGGTTGTTACCCTGATATAGTCACATATAATACTTTACTAACTGCATTATGTAAAGATGGGAAGGTGGATGTTGCAGTTGAGTTGTTGAATCAACTAGGGGGCAAGGGGTGCTCTCCTGTTTTAATTACTTACAACACAGTTATTGATGGGCTTTCTAAGGTGGGAAAGACAGATTATGCTGTGAAACTGTTGGAAGAGATGTGTGGGAAGGGTCTTGAACCCGACATAATCACTTACTCATCTCTAGTGGGAGGGCTGAGTCATGAAGGGAAGGTTGATCAAGCAATCAAGTTTTTCTGTGATTTAGAAGGATTAGGTATCAGTCCAAATGCTATAACGTACAACTCAATCATGTTGGGACTTTGCAAGGCTCGACAAACCAGTCAAGCTATTGATTTTTTGGCTTTTGTGATCTCGAGAGGATGTAAACCGACTGAAGCTACATACACCATTCTTATAGAATGCATTGCGTATGAAGGATTAGCTGAAGAGGCTTTGGGGTTATTGTATGAATTATGCTCCAGAGGGGTAGTGAAGAAAAGTTCAGCCGAACAGGGATCCATGAATTTTGAGAACTTTGTAGACTTTAGCTGCTGGCAGCAGGAAACGTGCAAATTGGCTAACTTCCTCGACAGTGATGTTGATCCATCTGTTTCCAAACCGATGGATATGAATTATGAAGTACAATCCGACCTTGGACTCATTGGACCAAAAGTAAATCCAAAAGCAATGGAGAAAAGCGCAACTTCATCTTCATCTCCCAGAGATGCTGGGTGCCTTTCATGTTGGCGATGTCTGAAACTGAAGCTTCCATGGCGAAAGCAAGCAAGCACTTACAGACCCATTGGTGGGTTTAAGTATGATCCTCTAAGCTATGCCCAGAACTTCGATGAAGGTTTGGTCGATGACGATGAAGCTCATACACGTCGTGGCTTCTCTGCTCGATATGCAGCCCCTTCTACTTACAAGCAGAGGTTTCATAATCTAAGTATCCATCAGGTTTGTCTTCTTGTTTCTTTCGGGCCCAACGAAACAGATAACTTCCGGAACCAGAACAAGTTGATCCCAGAGGGGCATGAACTTCTGCTTCAGCTGATCCAGAAGTTACTTGTTAACCAATCACGATTTGGCCGCTTGGCAGGACTTTATGCTTTTAGGAAGAGTTGA 1437 0.4273 MCSTGRWMDAEKLLSDVLRKGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVELLNQLGGKGCSPVLITYNTVIDGLSKVGKTDYAVKLLEEMCGKGLEPDIITYSSLVGGLSHEGKVDQAIKFFCDLEGLGISPNAITYNSIMLGLCKARQTSQAIDFLAFVISRGCKPTEATYTILIECIAYEGLAEEALGLLYELCSRGVVKKSSAEQGSMNFENFVDFSCWQQETCKLANFLDSDVDPSVSKPMDMNYEVQSDLGLIGPKVNPKAMEKSATSSSSPRDAGCLSCWRCLKLKLPWRKQASTYRPIGGFKYDPLSYAQNFDEGLVDDDEAHTRRGFSARYAAPSTYKQRFHNLSIHQVCLLVSFGPNETDNFRNQNKLIPEGHELLLQLIQKLLVNQSRFGRLAGLYAFRKS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0471 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 60 94 IPR002885 -
Lele01g0471 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Lele01g0471 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Lele01g0471 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Lele01g0471 478 Pfam PPR repeat 20 52 IPR002885 -
Lele01g0471 478 Gene3D Tetratricopeptide repeat domain 1 75 IPR011990 GO:0005515
Lele01g0471 478 PANTHER ATPASE EXPRESSION PROTEIN 3 179 268 - -
Lele01g0471 478 Gene3D Tetratricopeptide repeat domain 192 264 IPR011990 GO:0005515
Lele01g0471 478 Pfam PPR repeat family 199 245 IPR002885 -
Lele01g0471 478 Pfam PPR repeat family 132 177 IPR002885 -
Lele01g0471 478 Pfam PPR repeat family 59 108 IPR002885 -
Lele01g0471 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Lele01g0471 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Lele01g0471 478 FunFam Pentatricopeptide repeat-containing protein At1g09900 55 145 - -
Lele01g0471 478 Gene3D Tetratricopeptide repeat domain 76 191 IPR011990 GO:0005515
Lele01g0471 478 TIGRFAM PPR: pentatricopeptide repeat domain 202 236 IPR002885 -
Lele01g0471 478 TIGRFAM PPR: pentatricopeptide repeat domain 27 60 IPR002885 -
Lele01g0471 478 TIGRFAM PPR: pentatricopeptide repeat domain 132 166 IPR002885 -
Lele01g0471 478 TIGRFAM PPR: pentatricopeptide repeat domain 97 129 IPR002885 -
Lele01g0471 478 TIGRFAM PPR: pentatricopeptide repeat domain 167 201 IPR002885 -
Lele01g0471 478 TIGRFAM PPR: pentatricopeptide repeat domain 63 96 IPR002885 -
Lele01g0471 478 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0471 Lele-ChrLele01 2771824 2777067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0471 1 273 Glycosyltransferase AT1G05670 31.502 1.08e-47 173
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0471 01 2771824 2777067 Lele03g0480 03 2778402 2779352 hybridization
Lele01g0471 01 2771824 2777067 Lele04g0475 04 2858478 2858744 hybridization