Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02519 GTCAGGCTTAGGAAGGAAGAAGTTTGTGGGAAAGGAAGGAGGATGGAGAACACGGTAACATTACAGGAATGGTTTGACCGCGTTGACTCGGAGAAAAGTGGAAGCATAACGGCAGTGCAGCTGAAGGCTGCTCTGGCTGTGGGCAACCTGCAATTCCCCCTCTCAGTGGTTCACCAAATGATCAGGATGTACGATTTCGACAGAAATGGCACCATGAGCTTTCAAGAATTTGTTGCACTCAACAGCTTCCTTCTTAAGGTTCAACATGCATTTTCAGATCTAGAGAGGGGTCGTGGTTTTCTTGTACCTGATGATGTATTTGAGGCTTTGGTAAAAATTGGTTTCAAGCTGGATTCTCCTGCTTTTTACTCTGTCTGTGAGAGCTTCGATCAAAGTAAAAATGGAAGGTTTCGACTGGACGACTTCATATCAATATGTATATTCGTACAATCAGCTCGGAATCTGTTCAATTCTTTTGATACAGCAAAACAAGGCAGAGTTACTCTCGATCTGAATCAATTTGTCTATTGTACTGCCAATTGCAGAATATGA 552 0.4293 VRLRKEEVCGKGRRMENTVTLQEWFDRVDSEKSGSITAVQLKAALAVGNLQFPLSVVHQMIRMYDFDRNGTMSFQEFVALNSFLLKVQHAFSDLERGRGFLVPDDVFEALVKIGFKLDSPAFYSVCESFDQSKNGRFRLDDFISICIFVQSARNLFNSFDTAKQGRVTLDLNQFVYCTANCRI* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02519 183 ProSiteProfiles EF-hand calcium-binding domain profile. 16 51 IPR002048 GO:0005509
Lapu9g02519 183 SUPERFAMILY EF-hand 16 179 IPR011992 -
Lapu9g02519 183 ProSitePatterns EF-hand calcium-binding domain. 65 77 IPR018247 -
Lapu9g02519 183 PANTHER PEFLIN 18 181 - -
Lapu9g02519 183 SMART efh_1 20 48 IPR002048 GO:0005509
Lapu9g02519 183 SMART efh_1 56 84 IPR002048 GO:0005509
Lapu9g02519 183 CDD EFh_PEF_ALG-2_like 20 181 - -
Lapu9g02519 183 ProSiteProfiles EF-hand calcium-binding domain profile. 52 87 IPR002048 GO:0005509
Lapu9g02519 183 Gene3D - 4 181 - -
Lapu9g02519 183 Pfam EF-hand domain pair 33 79 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02519 Lapu-Chr9 39423555 39427371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02519 16 145 EF-hand Containing Proteins AT3G10660 27.007 8.83e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02519 - - gmx:100792880 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02519 9 39423555 39427371 Lapu9g02519 9 39423555 39427371 ECH