Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02516 ATGATGAGTAAGGGAATAGTGATATGGAGCGTAGTAATAGGAATGTTTGTGGGAGGAAGCTTGGGAGAGCAGTGTGGAAGGCAAGCAGGTGGTGCGCTGTGCCCAGGGGGTCTATGCTGCAGCCAATTCGGGTGGTGCGGCTCCACCGCCGACTACTGCGGCCCGGGTTGCCAGAGCCAATGCGGCGGACAACCAGGGGGCGGTGATCTCTCCTCTCTCATACCCAGGGCCACCTTCGACCAGATGCTCAAACATCGCAACGACGGAGCCTGCCCAGCCAGAGGCTTCTACACCTACGATGCCTTCATCGCCGCCGCCAAGGCTTTTCCCAGCTTCGGCAGCAGCGGAGACACTGCAACTCGCAAAAGGGAGATTGCGGCTTTCTTGGGGCAGACGTCTCACGAAACAACCGGGGGATGGGCGAGTGCACCGGACGGACCATACGCATGGGGATACTGCTTCGTGAGGGAGCAAAACCCAAGTGCCTACTGCTCCCCGACTCCCCAGTTCCCCTGCGCTCCAGGCCAGCAATACTATGGCAGGGGTCCCATCCAGATATCCTGGAACTACAACTACGGACAGTGCGGAAGAGCCATTGGGGTGGACCTGCTCAACAACCCAGACCTCGTCGCCACTGATCCCGTTGTCTCCTTCAAGTCCGCCATCTGGTTCTGGATGACCCCCCAGTCCCCCAAGCCTTCCTCCCACGACGTCATCACCAATCGATGGACCCCCTCCGCCGCCGATGTGTCCGCCGGCAGGCTTCCCGGGTACGGCACTGTGACGAACATCATCAACGGAGGCCTGGAGTGCGGCAGAGGACAGGATAGCAGAGTTGAGGACCGCATAGGGTTCTTCAAGAGATACTGTGACTTGCTTGGTGTTGGTTATGGCAACAACCTGGACTGCTACTCTCAGAGGCCTTTCGCAAATTCTCTCCTTCCTACTCTCCATTCCATCATCTAA 966 0.5849 MMSKGIVIWSVVIGMFVGGSLGEQCGRQAGGALCPGGLCCSQFGWCGSTADYCGPGCQSQCGGQPGGGDLSSLIPRATFDQMLKHRNDGACPARGFYTYDAFIAAAKAFPSFGSSGDTATRKREIAAFLGQTSHETTGGWASAPDGPYAWGYCFVREQNPSAYCSPTPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVVSFKSAIWFWMTPQSPKPSSHDVITNRWTPSAADVSAGRLPGYGTVTNIINGGLECGRGQDSRVEDRIGFFKRYCDLLGVGYGNNLDCYSQRPFANSLLPTLHSII* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02516 321 Gene3D - 73 304 - -
Lapu9g02516 321 ProSiteProfiles Chitin-binding type-1 domain profile. 22 63 IPR001002 GO:0008061
Lapu9g02516 321 ProSitePatterns Chitinases family 19 signature 1. 91 113 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lapu9g02516 321 SUPERFAMILY Lysozyme-like 70 309 IPR023346 -
Lapu9g02516 321 Pfam Chitin recognition protein 24 61 IPR001002 GO:0008061
Lapu9g02516 321 SMART ChitinBD_3 24 61 IPR001002 GO:0008061
Lapu9g02516 321 ProSitePatterns Chitinases family 19 signature 2. 216 226 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lapu9g02516 321 Gene3D - 22 63 IPR036861 GO:0008061
Lapu9g02516 321 PRINTS Chitin-binding domain signature 32 40 IPR001002 GO:0008061
Lapu9g02516 321 PRINTS Chitin-binding domain signature 40 47 IPR001002 GO:0008061
Lapu9g02516 321 PRINTS Chitin-binding domain signature 47 54 IPR001002 GO:0008061
Lapu9g02516 321 FunFam Endochitinase (Chitinase) 155 212 - -
Lapu9g02516 321 CDD chitinase_GH19 74 303 - -
Lapu9g02516 321 ProSitePatterns Chitin recognition or binding domain signature. 34 53 IPR018371 GO:0008061
Lapu9g02516 321 PANTHER CHITINASE-RELATED 28 307 - -
Lapu9g02516 321 CDD ChtBD1_GH19_hevein 23 62 - -
Lapu9g02516 321 PIRSF Endochitinase 1 310 IPR016283 GO:0004568|GO:0005975
Lapu9g02516 321 FunFam Basic endochitinase 22 63 - -
Lapu9g02516 321 Pfam Chitinase class I 74 303 IPR000726 GO:0004568|GO:0006032|GO:0016998
Lapu9g02516 321 SUPERFAMILY Plant lectins/antimicrobial peptides 24 64 IPR036861 GO:0008061
Lapu9g02516 321 Gene3D Endochitinase, domain 2 156 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02516 Lapu-Chr9 39411896 39413201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02516 23 314 Glycoside Hydrolase AT3G12500 71.812 5.71e-160 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02516 K20547 - egr:104419011 515.383