Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02512 ATGTCGTGTTTGTTGCCGCATTTCAATTGCCACCTCGACACTTTCAGGACCCATCCCTATGCTCTTCCTACCCATCTATCAAGAACAAGACCAAATTTCTGTTTCCAGCCCCAATGTCTCTTCTCCGCCACATCTTCTTCAACTCTGCTTAATTTGGAAAACAAGTTGGTATTGGATGCTCCTTCTGATCCAAACACGTCTTGGCCCTATGTCACAGCTGTTGCCCCTCCCACGCAGGCAAACTTTAAATCAACCTTGTCTACGGAATCACTTCTCACTAATGAAGAGGCTGTAATAGCTGCTGCTGCGTCTGAAGCCCTTGCTCTTGCTAAAGCAGCTGTGAAGGTTGCAAAGGATGCAGCTTTACTAGTAAAAAAGAAGCCCCAAGCGGAAGCTGAGTATAAATCCCATGTTTCTTCCAAATCTGATGATTTATTTCTCAAATGGTTTCAACGTATGGAAGTGGAAGATGGTGTAGCAGGGGAATGCATTGGTGCTGGAGCAGAAATGATGGATGGTGTTGACCTAAGCCCCAGTGAAGATGAATCTGATGTAGAACCTTCCCATGAGGAACTTGAGCGTCTGCAGGAAGAGCTTTCCGACAATATAGCTGTAAGATCCAGGCGCCAAACAGAAAGAAAAGCTAAAAGAGTCAGAGCAGCAGAGAAGGCTTCCACAAATGTTGCATCTTTTAAGCCTGGCTTCTCCAGCAGGAGAAAGCGTGTTTCTGTGCAAGAAGTAGATTATGCAGATCCACTTCGTTACTTAAGAACAACAACCAGTACTTCTAGGCTTCTTAGCTCAACTGAAGAAATCAAGTTGTCAGAAGGAATACAGGACCTTCTCAAGCTTGAGAAACTCCAGGAGGATCTTGCAGAAAGATGTGGTGGTCAGCCCACATTGGCTCAATGGGCTGCAGTGGCAGGGGTAGACCAAAAGACACTTAGGAAACGTTTAAATTATGGTAGACTTTGCAAAGACAAAATGATTAAAAGCAATATAAGACTTGTCATATCAATTGCAAAGAATTATCAGGGATCTGGGATGAATCTTCAAGATCTTGTCCAGGAAGGATGTCGAGGCCTTGTAAAAGGTGCAGAGAAGTTTGATGGTACTAAGGGTTTTAAATTCTCCACCTATGCTCATTGGTGGATTAAACAGGCTGTTCGAAAATCGCTTTCTGATCAGTCAAGAACTATTCGCTTGCCATTTCATATGGTGGAGGCAACTTACAGAGTGAAGGAGGCCAGAAAACAATTGTATAGTGAAAATGGAAGACAACCTGATGATGAAGAGGTTGCTGAAGCAACTGGGTTGTCTATGAAGAGGCTTACTGCTGTACTTTTGACTCCAAAGGCTCCCAGATCTCTGGAACAGAAGATTGGAATCAACCAAAATCTTAAACCTTCGGAAATAATTTCTGATCCTGATGCTGAAACAGCAGAAGAACAGCTCCTTAAGCAATTCATGAAGAAGGACCTGCAAGAGGCACTGGACAGTCTAAGTTCAAGAGAGAGGCAGGTGGTAAGATGGAGATTTGGTATGGATGATGGAAGAACGAAGACCCTGCAAGAGATAGGGGAGATGTTGGGTGTGAGTAGGGAGAGAATTAGGCAAATTGAATCAAGTGCATTTAAGAAGCTTAAGAACAAGAAGAGAACCAAACATTTCCAGCAGTATTTGGTTCCATAA 1692 0.4344 MSCLLPHFNCHLDTFRTHPYALPTHLSRTRPNFCFQPQCLFSATSSSTLLNLENKLVLDAPSDPNTSWPYVTAVAPPTQANFKSTLSTESLLTNEEAVIAAAASEALALAKAAVKVAKDAALLVKKKPQAEAEYKSHVSSKSDDLFLKWFQRMEVEDGVAGECIGAGAEMMDGVDLSPSEDESDVEPSHEELERLQEELSDNIAVRSRRQTERKAKRVRAAEKASTNVASFKPGFSSRRKRVSVQEVDYADPLRYLRTTTSTSRLLSSTEEIKLSEGIQDLLKLEKLQEDLAERCGGQPTLAQWAAVAGVDQKTLRKRLNYGRLCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLTAVLLTPKAPRSLEQKIGINQNLKPSEIISDPDAETAEEQLLKQFMKKDLQEALDSLSSRERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTKHFQQYLVP* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02512 563 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 397 448 IPR013324 -
Lapu9g02512 563 Pfam Sigma-70 region 3 408 484 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lapu9g02512 563 PIRSF Sigma_factor_SigC 36 563 IPR016262 -
Lapu9g02512 563 Pfam Sigma-70 region 2 329 398 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lapu9g02512 563 ProSitePatterns Sigma-70 factors family signature 2. 522 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu9g02512 563 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 251 399 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lapu9g02512 563 Pfam Sigma-70, region 4 497 549 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lapu9g02512 563 Gene3D RNA Polymerase Primary Sigma Factor 154 401 - -
Lapu9g02512 563 Gene3D - 402 478 IPR036388 -
Lapu9g02512 563 Gene3D - 483 563 IPR036388 -
Lapu9g02512 563 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 461 559 IPR013324 -
Lapu9g02512 563 PRINTS Major sigma-70 factor signature 353 366 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu9g02512 563 PRINTS Major sigma-70 factor signature 522 537 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu9g02512 563 PRINTS Major sigma-70 factor signature 501 513 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu9g02512 563 PRINTS Major sigma-70 factor signature 537 548 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu9g02512 563 PRINTS Major sigma-70 factor signature 377 385 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu9g02512 563 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 93 561 - -
Lapu9g02512 563 NCBIfam sigma-70 family RNA polymerase sigma factor 327 551 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lapu9g02512 563 CDD Sigma70_r4 491 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02512 Lapu-Chr9 39372631 39378189 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02512 - - gmx:100788815 939.102