Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02489 ATGGAAACTCGGAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCTCGTCCACCACTCGTTCCGCCAAGCGCTCTCGTCTTTCTTCCTCCTCCTCTTCGATCCCAAACACCCCAACTGTTAATACTCGTTCCCGTTCGGCCAGGACAAACACCACCAATTCCGTTTCTCTCATGGACCCCACCAACGAATCCTCCGGGTCAAGACGTGATCGCCGTGGCAAGAATTTGGAAAGGGACAATTCGGATAAAGGGAAGGAGAAGGAACAGGATGTTAGGATTAGGGATGTGGAAAGAGAGCGAGCTTTGGCGTTGAACATGGAGAGTGAAGGTGTTGGGGACGACGATGATAATGATAGTGAGGGTGGCTTGCATCAGAATTTGACTTCTGCTAGTAGTGCCCTTCAGGGGCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATCTGCTTCCTGCCACCGCTATGGGTGGTTCTGCGTCCTCTTCTCATCAGAGTGGCAGACTCAAGAAAATTCTGGCTGGATTGCGTGCTGACGGAGAAGAAGGTCGTCAGCTGGAGGCACTGTCGCAGCTTTGTGACATGCTTTCCATTGGCACCGAAGAATCCCTTAGTACATTTTCCGTTGATTCGTTCGTTCCTGTGTTAGTGGGGTTGCTTAACCATGAGAGCAATCCCGATGTCATGCTACTTGCGGCCAGGGCGCTAACCCATTTATGCGACGTTCTTCCCTCATCCTGTGCTGCTGTTGTGCATTATGGGGCAGTGTCTATATTCTGTGCGAGGTTGCTTACGATAGAGTACATGGACTTGGCTGAGCAGTCTCTTCAAGCGCTAAAGAAGATTTCGCAGGAGCACCCAACTGCCTGTCTTCGAGCTGGAGCTCTGATGGCTGTACTTTCTTATTTGGACTTCTTCTCAACAGGAGTTCAGCGGGTAGCATTGTCTACTGCTGCAAACATGTGCAAGAAGCTTCCTCCTGATGCAGCTGACTTTGTAATGGAAGCCGTTCCTCTTTTGACAAACCTTCTTCAGTACCATGACTCCAAGGTTCTGGAACATGCGTCTGTTTGTCTGACTCGAATAGCTGAAGCATTTGCGTCATCTCCAGACAAACTAGATGAATTATGCAATCATGGACTGGTAACACAAGCTGCCTCTCTCATTTCTACCAGCAGTTCTGGAGGTGGACAGGCTTCTCTCAGCACTCCGACATATACTGGTCTGATCCGCCTTCTTTCCACATGTGCCAGTGGATCCCCTCTTGGAGCCAAAACATTGCTTCTCCTTGGAATTAGTGGCATTCTGAAAGATATACTATCCGGTTCTGGTGTTTCTTCTAACACCTCCGTTTCACCTGCATTAAGTAGGCCGGCAGATCAGATATTTGAGATTGTGAATCTGGCAAATGAACTTCTGCCTCCATTGCCGCATGGAACCATTTCTCTTCCTGTCAGCTCCAACTTGTTTGTAAAAGGGTATTTTGTAAAAAAATGTCCTTCTGGCAGTTCCGGACAAGAAGACACCACCAATGGAAATGTTCATGAGATATCAGCTCGTGAGAAATTATTAAACGATCAGCCTGAGCTACTTCAGCAATTTGGGATGGATCTCCTCCCAGTTCTAATGCAGATATACGGTGCCAGTGTCAATGGTCCTGTTCGCCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACTGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGTTTCTTAGCCGGTGTGTTAGCATGGAAAGATCCGCATGTTTTGGTACCTGCCTTGCAGATTTCAGAAATTCTTATGGAAAAGCTTCCAGGAACTTTCTCTAAGATGTTTGTAAGAGAAGGTGTGGTCCATGCAGTTGACCAACTTATTTTGGCTGGAAATTCAACCAATATATCTATACAAACATCTGCTGAGAAGGATAGTGATTCTGTATCTGGAACTCATTCTCGCCCCAGACACTACCGCCTGCGCAGTGGTAATTCAAACCCGGATGCAAACTATTTGGATGATTTGATGAAGAGTCCAGTTCCAGTAAATGTTGGTTTGCCAACAAGTTCTGTAGAAACTCCGACTACTAGTTCCAGTATCCGTGTTTCTATTGGTTCAGTTGCTAGAGGTTTTAAAGACAAGTACTTTCCTTCTGATCCTGGGTCTATTGAAGTAGGTGTTAGTGATGATCTTTTGCATTTGAAAAATCTGTGCACAAAGTTGAACACTTGTGTTGATGATCAAAAAACTAAGGCAAAGGGAAAAGTTAAAGCTTCTGGATTTGGTCTGCACGATAATTCTACTAACATTGAAGAATATTTGATTGGGGTGATATCTGACATGTTAAAGGAACTTGGCAAAGGTGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGAAGCCTTGTTGGGTTATTTATCTTGTGGGTATTTTGCTAAAGATCGAATCTCAGAAACCGATCTCCCCAAGCTTCGTCAACAGGCACTTGCAAGGTTCAAGTCATTTGTTGCTATTGCACTCCCTTTGAGCATTGATAATGGGGCTGTTGCTCCTATGACTGTCTTGGTTCAGAAACTTCAAAATGCATTGTCCTCATTGGAGCGCTTCCCTGTAATGCTGAGTAATTCATCTCGTTCATCTAGTGGTAGTGCACGTCTCTCCTCTGGGTTAAGTGCATTATCACAGCCCATAAAACTACGTCTCTGTCGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCTTCCAATGTGGTACTGATTGATCCATTAGCAAGTTTAGCAGCCATTGAGGAATTTCTGTGGACTCGTGTCCAGCGTAGTGAATCTGGTCAAAAGTCTACTGTAGCTGCTGACAATTCTGAATCTGGAACAGCTCCTGCAGGGGCAGGCGTTTCATCTCCTTCCTCTTATACTCACTCCACTACCCGTCGTCATTCAACTAGATCCAGATCATCTTTCAATGTAGGAGATACACCTAGAAAAGAAACATCTCAAGATAAAAGCATGAATTCATCTAAGAGCAAGGGTAAAGCTGTATTAAAGGCTGCACAAGAGGAAGCACGAGGACCCCAAACACGAAATGCTGTTCGCATAAGAGCAGCTCTAGATAAAGATGCTCAAATGAAACCTGTAAATGGTGAATCAACTTCTGAGGATGAAGAATTGGATATATCTCCTGTTGAAATTGATGAGGCTTTGGTGATTGAAGATGATGATATTTCTGATGACGAGGATGAAGACCATGAAGATGTGTTGAGGGATGATTCTCTTCCTGTCTGCTTGCCTGACAAAGTACACGATGTTAAATTGGGTGACTCAGCTGAGGAGAGTACTGTTGCTCCAGCAACAAGTGATAGCCAGACTAATGCAGCCTCAGGTTCTAGCAGCAAAGCTGTTACAGCCAGGGGATCTGATTCTGCTGATTTTAGGAGTGGGTATTCATCTAGCTCGAGGGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGATATGCTAATAGCAGAGGTATCCGGGGTGGCAGGGATAGGCATGGACGCCTGTTGTTTGGTACTTCTAATGATCCTCCAAAATTAATTTTTACTGCTGCCGGGAAGCAGCTTAATAGGAATTTGACTATATACCAGGCAATTCAAAAACAGCTTGTGCTAGATGAAGATGATGATGAGAGATTTGCTGGCAGTGACTATGTATCCAGTGATGGAGGCAGTCTTTGGGGTGATATTTACACCATCACTTATCAAAGAGCAGAAAACCAGACAGACAAGGTATCTACTGGAGGATCAAGTTCAAATACTTCAAAACCTGCCAAATCTGGCTCTGCCTCAAATTCCAGCCCAGAAGCTAAGTTGCATCCGACATCTGTTTTAGACAGTATATTGCAGGGAGAATTGCCGTGTGATCTAGAGAAATCTAATCCCACCTACAATATTTTGGCACTCCTGCGTGTGTTGGAGTGTTTGAACCAACTCGCACCTCGATTGAGGTCTGAAATGGTTTCTGATAGCTTTGCTGAGGGAAAAATCTCTAATTTCGATCAGCTGGTTGTTACAAATGGTGCCAGGGTTCTTCCAGAGGAATTTGTTAGTGGCAAGCTTACTCCAAAATTGGCTAGGCAAATACAAGATGCCCTCGCTCTTTGCAGTGGTAGTCTACCCTTGTGGTGTTACCAGTTGACTAAAGCATGCCCTTTCTTGTTTCCTTTTGAGACTCGACGACAGTACTTCTATTCTACTGCATTTGGGTTATCTCGAGCATTGTATCGACTTCAGCAGCAGCAAGGTGCCGATGGTCATGGATCAGCATCTGAGAGAGAGGTAAGGGTAGGGAGATTACAGCGCCAAAAAGTTCGTGTCTCTCGAAATCGTGTCTTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAAGCTGTACTTGAAGTAGAATATTTTGGTGAGGTTGGCACTGGCCTGGGACCCACCCTTGAGTTTTATACAATCCTAAGTCATGATTTACAAAAGGTTGGACTGCAAATGTGGAGATCCCATTCTTCAAATAAACATGAAATGGAAGTTGATGGAGATGAAAAGATAAAGAATAGTGTAGGCTCTAGGCCTGATATGGCTGGAGATGAAGAACTTGTTCAAGCTCCTATGGGTTTGTTTCCTCGGCCTTGGCCTACAAATTCTGATGCATCAGAGGGTAGCCCGTTTTCAAAAGTCATTGAGTATTTTCGGCTGCTGGGTCGTGTTATGGCGAAAGCTCTTCAAGATGGACGACTATTAGATCTGCCATTGTCAGTGGCATTTTATAAGCTTGTTCTCGGTCAAGATCTTGATTTGCATGACATTCTGTTCATTGATGCTGAGCTTGGGAAGACTTTGCAAGGGTTGAATGCCCTTGTTCATCGGAAACATTATATAGAATCTACTGGTGGTAGCTATACTGACACACTTTATAACTTACATTTTCATGGTGCGCCAATTGAAGATCTTTGCCTAGATTTTACACTTCCTGGTTTTCCTGAGTACACCTTGAAACCTGGAGATGAAACTGTCGATATCAACAATTTGGAGGAGTACATATCCTTGGTGGTTGATGCAACAGTCAAGACTGGAACCTTGCGGCAAATAGAAGCATTTAGAGCGGGGTTTAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGACTATTTGCTTTGTGGCCGCAGGGAGTTGTGGGAGGCTGAGACACTTGCTGATCATATAAAATTCGACCATGGGTACAATGCAAAGAGCCCTCCTATTGTTAATTTACTTGAAATTATGGGGGAATTCACACCGGAGCAGCAGCGGGCCTTCTGTCAATTTGTTACCGGTGCACCCAGGCTTCCTCCTGGTGGCCTGGCAGTTCTAAATCCAAAACTAACGATTGTGAGGAAGCTTTCGTCAACTGCAGTTAATACTTCATCAAACGGCAATGGACCTTCGGAAACCGCGGACGATGACTTGCCTAGTGTGATGACATGTGCTAATTACCTGAAACTTCCTCCTTACTCTACCAAGGAAGTTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGA 5652 0.4453 METRSRKRAEASSAAPSSSSTTRSAKRSRLSSSSSSIPNTPTVNTRSRSARTNTTNSVSLMDPTNESSGSRRDRRGKNLERDNSDKGKEKEQDVRIRDVERERALALNMESEGVGDDDDNDSEGGLHQNLTSASSALQGLLRKLGAGLDDLLPATAMGGSASSSHQSGRLKKILAGLRADGEEGRQLEALSQLCDMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDVMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPPDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNTSVSPALSRPADQIFEIVNLANELLPPLPHGTISLPVSSNLFVKGYFVKKCPSGSSGQEDTTNGNVHEISAREKLLNDQPELLQQFGMDLLPVLMQIYGASVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQISEILMEKLPGTFSKMFVREGVVHAVDQLILAGNSTNISIQTSAEKDSDSVSGTHSRPRHYRLRSGNSNPDANYLDDLMKSPVPVNVGLPTSSVETPTTSSSIRVSIGSVARGFKDKYFPSDPGSIEVGVSDDLLHLKNLCTKLNTCVDDQKTKAKGKVKASGFGLHDNSTNIEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVEALLGYLSCGYFAKDRISETDLPKLRQQALARFKSFVAIALPLSIDNGAVAPMTVLVQKLQNALSSLERFPVMLSNSSRSSSGSARLSSGLSALSQPIKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWTRVQRSESGQKSTVAADNSESGTAPAGAGVSSPSSYTHSTTRRHSTRSRSSFNVGDTPRKETSQDKSMNSSKSKGKAVLKAAQEEARGPQTRNAVRIRAALDKDAQMKPVNGESTSEDEELDISPVEIDEALVIEDDDISDDEDEDHEDVLRDDSLPVCLPDKVHDVKLGDSAEESTVAPATSDSQTNAASGSSSKAVTARGSDSADFRSGYSSSSRGAMSFAAAAMAGLGYANSRGIRGGRDRHGRLLFGTSNDPPKLIFTAAGKQLNRNLTIYQAIQKQLVLDEDDDERFAGSDYVSSDGGSLWGDIYTITYQRAENQTDKVSTGGSSSNTSKPAKSGSASNSSPEAKLHPTSVLDSILQGELPCDLEKSNPTYNILALLRVLECLNQLAPRLRSEMVSDSFAEGKISNFDQLVVTNGARVLPEEFVSGKLTPKLARQIQDALALCSGSLPLWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSASEREVRVGRLQRQKVRVSRNRVLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKVGLQMWRSHSSNKHEMEVDGDEKIKNSVGSRPDMAGDEELVQAPMGLFPRPWPTNSDASEGSPFSKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQDLDLHDILFIDAELGKTLQGLNALVHRKHYIESTGGSYTDTLYNLHFHGAPIEDLCLDFTLPGFPEYTLKPGDETVDINNLEEYISLVVDATVKTGTLRQIEAFRAGFNQVFDISSLQIFTPQELDYLLCGRRELWEAETLADHIKFDHGYNAKSPPIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNTSSNGNGPSETADDDLPSVMTCANYLKLPPYSTKEVMYKKLLYAISEGQGSFDLS* 1884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02489 1883 FunFam HECT ubiquitin protein ligase family protein KAK 163 477 - -
Lapu9g02489 1883 Pfam HECT-domain (ubiquitin-transferase) 1511 1883 IPR000569 GO:0004842
Lapu9g02489 1883 Gene3D Hect, E3 ligase catalytic domain 1754 1881 - -
Lapu9g02489 1883 SMART hect_3 1471 1883 IPR000569 GO:0004842
Lapu9g02489 1883 MobiDBLite consensus disorder prediction 10 66 - -
Lapu9g02489 1883 SUPERFAMILY ARM repeat 169 647 IPR016024 -
Lapu9g02489 1883 MobiDBLite consensus disorder prediction 1 128 - -
Lapu9g02489 1883 Gene3D Hect, E3 ligase catalytic domains 1401 1642 - -
Lapu9g02489 1883 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1752 1882 - -
Lapu9g02489 1883 FunFam E3 ubiquitin-protein ligase UPL3 1401 1644 - -
Lapu9g02489 1883 MobiDBLite consensus disorder prediction 954 1003 - -
Lapu9g02489 1883 CDD HECTc 1460 1878 IPR000569 GO:0004842
Lapu9g02489 1883 MobiDBLite consensus disorder prediction 954 1100 - -
Lapu9g02489 1883 ProSiteProfiles HECT domain profile. 1583 1883 IPR000569 GO:0004842
Lapu9g02489 1883 MobiDBLite consensus disorder prediction 1121 1158 - -
Lapu9g02489 1883 Gene3D - 159 477 IPR011989 -
Lapu9g02489 1883 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 11 1883 IPR045322 GO:0006511|GO:0061630
Lapu9g02489 1883 MobiDBLite consensus disorder prediction 1061 1095 - -
Lapu9g02489 1883 MobiDBLite consensus disorder prediction 1265 1297 - -
Lapu9g02489 1883 MobiDBLite consensus disorder prediction 1265 1298 - -
Lapu9g02489 1883 MobiDBLite consensus disorder prediction 67 107 - -
Lapu9g02489 1883 SMART arm_5 327 365 IPR000225 GO:0005515
Lapu9g02489 1883 SMART arm_5 201 242 IPR000225 GO:0005515
Lapu9g02489 1883 SMART arm_5 284 324 IPR000225 GO:0005515
Lapu9g02489 1883 MobiDBLite consensus disorder prediction 647 677 - -
Lapu9g02489 1883 MobiDBLite consensus disorder prediction 1116 1158 - -
Lapu9g02489 1883 SUPERFAMILY Hect, E3 ligase catalytic domain 1453 1876 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02489 Lapu-Chr9 39171409 39182559 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02489 K10590 - gmx:100791450 3132.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02489 9 39171409 39182559 Lapu9g02489 9 39171409 39182559 ECH