Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02447 ATGCCTGCCCTGGCTTGTTGCGTGGATGCTGCAGCACCTCCCGGCTATGCATTTGCCGGTGACATCTCTTTTCCGGCGCCGGTCGCTTTTACCGGCGTTCCTCTGCCCACGACAGACGACAACAGCACCCATTGGTCTCCGTCCCTCTCCTCCGCTCTCTACAACGTCGAAGGCTGGGGCGGCCCCTACTTTGCTGTCAACGCAGCCGGGAACATTTCCGTGCGCTCCCACGGTTCCGCCACTATGTCGCACCAGGAGATCGATTTGCTGAAGATTGTGAAGAAGGCCTCCGATGCCAAATCTCTTGGGGGCCTCGGCCTTCAGCTTCCTCTCATTGTCCGCTTCCCGGACGTTCTCAAGAACCGCTTGGAGTGCCTTCAGTCGGCGTTCGATTACGCAATCCAAACCGAGGGTTACGGCTCTCATTACCAGGGAGTTTACCCTGTGAAATGCAACCAGGACCGGTTCGTGGCGGAGGACATAGTCAAATTCGGTTCGCCTTTTCGGTTCGGTCTGGAGGCAGGGTCCAAACCGGAACTCCTTCTGGCCATGAGCTGTTTGTGCAAAGGCAATCCTGACGCGTTGTTGATCTGTAACGGCTTCAAAGACGCAGAGTACATTTCTCTTGCCCTTGTTGCCAACAAGCTCGCCCTCAACACCGTGATTGTTCTGGAGCAAGAGGAGGAGGTTGATTTAATCGTTGAATTAAGCAAGAAGCTTTGCATTAAGCCCGTGATTGGGTTGCGTGCGAAGCTCCGAACCAAGCATTCTGGCCATTTCGGTGGAACTTCAGGCGAGAAAGGAAAGTTTGGTCTTACCACCGCTCAAATTCTGAGAGTTGTGAAGAAGCTGGACCTGGCAGGCATGCTGGACTGCCTGCAACTGCTGCATTTTCATATTGGTTCTCAGATTCCTTCGACAGCGTTGCTTGCTGATGGCGTGGGAGAGGCCGCGCAGATCTATTGCGAACTGGTTCGGCTCGGGGCGAACATGCGGGTCATCGATATTGGAGGTGGACTGGGCATTGATTACGATGGTTCCAAATCGTGTGACTCGGATATTTCAGTCGGGTACAGTCTGGAGGAGTATGCTGCGGCGGTTGTTCACGCGGTTCAGTGTGTGTGCGATCGAAGGACCGTCAAGCACCCTGTTATCTGCAGCGAGAGTGGAAGGGCCATTGTGTCCCATCACTCGGTCTTGGTCTTTGAGGCGGTTGGCACAAGCAGCACCGTCAGCGGAGCCTCTCCGGTATTTTCTTCTCCATATCTGACCGGGGATCTATCGGAGGACTACCGTTTTCTGTCGGAGGCCGCGTTTGGAGGGGACTATGAAAGGTGTTTGGTGTACACAGAGGAGATGAAGGAGCGGTGCGTGGAGCAGTTCAAACAAGGGACGGTGTGTATGGAGCAGCTGGCTGCGGTGGAGGGGCTGTGTGAGTTGGTGAGGAAGGCGGTTGGGGCTGGGGAACCTGTTCGGAGATACCATGTGAACCTCTCTGTTTTCACTTCCGTTCCTGACGCGTGGGGCATTGAACAGGTGTTTCCCATCATCCCCATTCATCGCTTGGACGAGAAGCCTTCCGTGAGAGGTATTCTGTCGGATTTGACTTGCGACAGCGATGGGAAGATCGACAAATTCATCAACGGGGAGTCCAGCCTGCCGCTGCATGAAGTTGAAGGAGGAAGTTACTATTTGGGAATGTTCTTGGGTGGGGCCTACGAGGAGGCGCTCGGTGGATTCCACAACTTGTTCGGCGGTCCCAGCGTTGTGAGGGTGTCGCAGAGCGACGGCCCTCACAGCTTCGCAGTCACGCGGGCCGTGCCAGGTCCATCCTGTGGAGATGTTCTTCGAGTGATGCAGCACCAGCCCGAGCTCATGTTCGAGACTCTCAAGCACCGCGCCTATGAGTATGTCAGCCACGACAATGCTGCGGTTCTGGCCTCTGGCCTTGCTCGCACGTTTGACAGGATGCCCTATCTGGTTTCCCTGTCTTCTTTTGATGATGTTGACGGCGCTGGCGATCCCACTCCGGAGGATGAGGTCGTGCAGTGGTCTTATTAG 2061 0.5546 MPALACCVDAAAPPGYAFAGDISFPAPVAFTGVPLPTTDDNSTHWSPSLSSALYNVEGWGGPYFAVNAAGNISVRSHGSATMSHQEIDLLKIVKKASDAKSLGGLGLQLPLIVRFPDVLKNRLECLQSAFDYAIQTEGYGSHYQGVYPVKCNQDRFVAEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGNPDALLICNGFKDAEYISLALVANKLALNTVIVLEQEEEVDLIVELSKKLCIKPVIGLRAKLRTKHSGHFGGTSGEKGKFGLTTAQILRVVKKLDLAGMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGANMRVIDIGGGLGIDYDGSKSCDSDISVGYSLEEYAAAVVHAVQCVCDRRTVKHPVICSESGRAIVSHHSVLVFEAVGTSSTVSGASPVFSSPYLTGDLSEDYRFLSEAAFGGDYERCLVYTEEMKERCVEQFKQGTVCMEQLAAVEGLCELVRKAVGAGEPVRRYHVNLSVFTSVPDAWGIEQVFPIIPIHRLDEKPSVRGILSDLTCDSDGKIDKFINGESSLPLHEVEGGSYYLGMFLGGAYEEALGGFHNLFGGPSVVRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAYEYVSHDNAAVLASGLARTFDRMPYLVSLSSFDDVDGAGDPTPEDEVVQWSY* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02447 686 PRINTS Arginine decarboxylase signature 375 392 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 PRINTS Arginine decarboxylase signature 571 592 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 PRINTS Arginine decarboxylase signature 139 153 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 PRINTS Arginine decarboxylase signature 197 212 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 PRINTS Arginine decarboxylase signature 522 547 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 PRINTS Arginine decarboxylase signature 223 244 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 PRINTS Arginine decarboxylase signature 247 269 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 PRINTS Arginine decarboxylase signature 115 130 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 PRINTS Arginine decarboxylase signature 497 518 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 CDD PLPDE_III_ADC 112 592 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 328 341 IPR022657 -
Lapu9g02447 686 NCBIfam arginine decarboxylase 45 660 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 147 165 IPR022653 -
Lapu9g02447 686 Gene3D Alanine racemase 116 397 IPR029066 -
Lapu9g02447 686 SUPERFAMILY PLP-binding barrel 115 397 IPR029066 -
Lapu9g02447 686 FunFam Biosynthetic arginine decarboxylase 116 397 - -
Lapu9g02447 686 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 142 395 IPR022644 GO:0003824
Lapu9g02447 686 PANTHER ARGININE DECARBOXYLASE 1 661 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 SUPERFAMILY Alanine racemase C-terminal domain-like 488 595 IPR009006 GO:0003824
Lapu9g02447 686 Gene3D - 412 490 - -
Lapu9g02447 686 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 54 594 IPR009006 GO:0003824
Lapu9g02447 686 PIRSF ARGDC 34 664 IPR002985 GO:0006527|GO:0008295|GO:0008792
Lapu9g02447 686 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 571 584 IPR000183 GO:0003824
Lapu9g02447 686 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 385 404 IPR000183 GO:0003824
Lapu9g02447 686 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 290 303 IPR000183 GO:0003824
Lapu9g02447 686 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 147 165 IPR000183 GO:0003824
Lapu9g02447 686 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 171 183 IPR000183 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02447 K01583 - gmx:548071 1223.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02447 9 38874444 38878151 Lapu9g02447 9 38874444 38878151 ECH