Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02384 ATGGCCACCACCGCCACCTCCGCCACCGAGCCTTCACCTTCCCCTGCCGAAACGCCTCCGACCCCAATTCCTCCGAAGCAACCACCGCCTCCTCAGCTGCCTTCGTTGGCAGCGGTGAAACCAGAGGCGCCATTGTCTGATCCGAAATCTTCCGCGGATGCCAACGGAATCGTGGTCCCGAGCTACTCTCGATGGTTCTCGTGGGACTCGATTCACGAAAGCGAGGTGCGCCACCTCCCTGAGTTCTTCGAATCGGCGTCCAAGAGCCCTAGGGTTTACAAGTACTACAGGAATTCCATCGTGAAGTTCTTCAGGTACAATCCCACCCGAAAAATCACCTTCACCGATGTCCGCAAAACGCTCGTTGGAGACGTCGGTTCCATCCGCAGAGTCTTCGATTTCCTCGAAGCTTGGGGCCTTATCAATTACCACCCCTCTTCGTCGCTTACCAAACCCTTGAAGTGGGACGACAAGGAGTCCAAACCCGACTCTGCGTCAAACCCCACCGAATCTTCTTCCACTCCCGCCAAAGAAAACACGAAGAGACTCTGCAGTGGCTGCAAAGCCGTCTGTACCATTGCTTGTTTTGCTTGTGACAAGCATTTGATAGAGGGAACGTTGAAATGTGTGCAGTATGCTTTGACTCTTTGTGCGAGGTGTTATGTTCGTGGCAATTATCGAGTTGGTGTGAACTCTTCGGATTTTAGGCGAGTGGAGATAAGCGAGGAGACAAAGACAGATTGGAGCGAAAAGGAGACGACAAATCTTCTGGAAGCTATTACGCATTATGGTGATGATTGGAAGAGGGTTTCTCAGCATGTTGCTGGCAGAACTGAGAAGGAGTGCGTTGCTCATTTTTTGAAGCTTCCTTTTGCGGATCGATTCCAGAATTATCAGCAACAACCTGCTGTCAATGGCACTGATAACAGTTGTAATCAGTTAAAGAGGATAACTAATGCTGATGCTGAATCTGAACTGGATACTGTTGCCTCAGCTGAATCCAGTAAAAGAATGCGTCTCACGCCTCTTGCAGATGCAAGCAATCCTATTATGGCTCAGGCTGCTTTCCTGTCTGCTTTGGCAGGGTCAGAGGTTGCACAAGCTGCTGCTCAAGCTGCATTGACAACTTTGTCTGAGGTTTACAAGGCAACTAGAATAAATTATCGGTCATTTCCAAGGAATACTTTGCTGCAAGATGCCGGGGTCTCAATTAATGGTGGCAATACTTCAGATGCATTTCAAGGATCTCGATTGCATGCGCATATACAGCTTGAGAAGGAAGAGTTAGATGTAGAAAAAGGAATTTCTGAGATTATAGAAGTTCAGATGAAAAATATCCAAGAGAAGCTGTTCCATTTTGAAGATTTAGACCTGCTGATGGAAAAAGAAAGCCAGCAGCTGGAGCAAATGAAAAATATGTTTTTCCTCGATCAGCTTACTCTTTTATTTAATAAATCATCTGCTCCAAAAACCGGAGAATGCCAAGAAGGCAATAGTGTAAAGACGAACAATGATTGA 1518 0.4723 MATTATSATEPSPSPAETPPTPIPPKQPPPPQLPSLAAVKPEAPLSDPKSSADANGIVVPSYSRWFSWDSIHESEVRHLPEFFESASKSPRVYKYYRNSIVKFFRYNPTRKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINYHPSSSLTKPLKWDDKESKPDSASNPTESSSTPAKENTKRLCSGCKAVCTIACFACDKHLIEGTLKCVQYALTLCARCYVRGNYRVGVNSSDFRRVEISEETKTDWSEKETTNLLEAITHYGDDWKRVSQHVAGRTEKECVAHFLKLPFADRFQNYQQQPAVNGTDNSCNQLKRITNADAESELDTVASAESSKRMRLTPLADASNPIMAQAAFLSALAGSEVAQAAAQAALTTLSEVYKATRINYRSFPRNTLLQDAGVSINGGNTSDAFQGSRLHAHIQLEKEELDVEKGISEIIEVQMKNIQEKLFHFEDLDLLMEKESQQLEQMKNMFFLDQLTLLFNKSSAPKTGECQEGNSVKTNND* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02384 505 SMART sant 244 292 IPR001005 -
Lapu9g02384 505 MobiDBLite consensus disorder prediction 1 52 - -
Lapu9g02384 505 Gene3D - 63 147 IPR036388 -
Lapu9g02384 505 ProSiteProfiles SWIRM domain profile. 57 152 IPR007526 GO:0005515
Lapu9g02384 505 MobiDBLite consensus disorder prediction 155 179 - -
Lapu9g02384 505 CDD SANT 248 289 IPR001005 -
Lapu9g02384 505 MobiDBLite consensus disorder prediction 165 179 - -
Lapu9g02384 505 Gene3D - 243 294 - -
Lapu9g02384 505 Pfam SWIRM-associated region 1 420 483 IPR032451 -
Lapu9g02384 505 Coils Coil 453 473 - -
Lapu9g02384 505 FunFam SWI/SNF complex subunit SMARCC2 isoform c 63 148 - -
Lapu9g02384 505 SUPERFAMILY Homeodomain-like 244 293 IPR009057 -
Lapu9g02384 505 SUPERFAMILY Homeodomain-like 55 153 IPR009057 -
Lapu9g02384 505 Pfam Myb-like DNA-binding domain 246 289 IPR001005 -
Lapu9g02384 505 ProSiteProfiles SANT domain profile. 243 294 IPR017884 -
Lapu9g02384 505 FunFam SWI/SNF complex subunit SMARCC2 isoform C 243 294 - -
Lapu9g02384 505 ProSiteProfiles Myb-like domain profile. 240 290 IPR001005 -
Lapu9g02384 505 Pfam SWIRM domain 60 143 IPR007526 GO:0005515
Lapu9g02384 505 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 245 296 IPR017930 -
Lapu9g02384 505 MobiDBLite consensus disorder prediction 13 37 - -
Lapu9g02384 505 PANTHER SWI/SNF COMPLEX-RELATED 17 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02384 Lapu-Chr9 38363097 38366795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02384 165 286 EF-hand Containing Proteins AT3G07740 30.921 4.90e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02384 K11649 - gmx:100779777 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02384 9 38363097 38366795 Lapu9g02384 9 38363097 38366795 ECH