Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02332 ATGCCTACGATAGTTTCTGAGGCATTCCAACCCTTGAGCTTGAAGCCTGTTTTCAGTGCCTCAGGGATTAAGGGCAAGCCAGTGACTGCGTTGTCACCACAAGAAAATGCCCTCACTCATTTCATTCAAACAGTCATTGCGGAAAAACCAGACATTGACTCTCCATTCAGCGTCCTAGATTTGGGGGTCGTTATGGCCTTAATGGACAAATGGGCCAGCAAGCTCCCCACGGTCCAGCCCTTCTACGCCGTCAAGTGCAACCCCAACCTCTCCCTCATCGGCGCTCTCGCCGCCCTCGGCGCCAGCTTCGACTGCGCCAGCAAAGCCGAGATCGAAGCCATTTTATCCCTCGGAGTCTCACCAGACCGCATCATCTACGCCAACCCTTGCAAATCCGAATCCCACATCAGATACGCCGCCACCGTAGGTGTCAACGTCACAACCTACGACTCCAAAGACGAGGTAGAAAAGATACGCAAATGCCACCCCACGTGCGAGTTGCTCCTGCGTATCAAGCCCCCCCAAGACAGTGGAGCGCGCTCCAGCTTGGGCCTCAAATACGGCGCGCTTCCCGAAGAAGTCCCGGAGCTTCTGAGCGTGGCTCACGCCGCGGGACTCAAAGTGACCGGCGTGTCCTTCCACATTGGAAGTGGTGGAGGCGACGCGCAAGCTTACCGCGGAGCCATATGTGCGGCTAAGTCCGTCTTCGACGTGGCTTCCCGTCTGGGCATGCCGAGAATGCGCGTTCTCGACATCGGCGGCGGCTTCACCTCCGGGCCGGTGTTCGACGCCGCGGCTATGAAAATCAACGCGGCGATTCAAGGCAGCTTCGGGAACGAAGAGGGGCTGGTGGTTATTGGCGAGCCGGGTCGTTACTTTGCGGAAACGGCTTTCACGTTGGCCACGAAGGTTATCGGGAAACGCGTGAGAGGAGAGTTGAGGGAGTATTGGATTGACGATGGAATTTATGGAACGCTTAATAACATTGTATTTGACTACGCTACGGTCACATGCATGGTACTGGCGTGCACCTCGAAACCTGAGAACCCTTCTTGCAGGGATTCCGAAACCTACTCTTCCACCGTGTTTGGACCAACTTGCGATTCATTTGACACTGTTCTGACGGATTACCAGCTTCCGGAACTGGAAGTGAACGATTGGCTTGTGTTCCCGAACATGGGTGCTTACACAACTTCTTCTGCCACTAACTTCAATGGGTTTAGCTCCTCAGTGAAATCCACATTCCTTGCGTATTCCAACCCTATCACGCGAGAACAGACCACGTTCTAG 1290 0.5473 MPTIVSEAFQPLSLKPVFSASGIKGKPVTALSPQENALTHFIQTVIAEKPDIDSPFSVLDLGVVMALMDKWASKLPTVQPFYAVKCNPNLSLIGALAALGASFDCASKAEIEAILSLGVSPDRIIYANPCKSESHIRYAATVGVNVTTYDSKDEVEKIRKCHPTCELLLRIKPPQDSGARSSLGLKYGALPEEVPELLSVAHAAGLKVTGVSFHIGSGGGDAQAYRGAICAAKSVFDVASRLGMPRMRVLDIGGGFTSGPVFDAAAMKINAAIQGSFGNEEGLVVIGEPGRYFAETAFTLATKVIGKRVRGELREYWIDDGIYGTLNNIVFDYATVTCMVLACTSKPENPSCRDSETYSSTVFGPTCDSFDTVLTDYQLPELEVNDWLVFPNMGAYTTSSATNFNGFSSSVKSTFLAYSNPITREQTTF* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02332 429 PRINTS Ornithine decarboxylase signature 320 333 IPR002433 GO:0006596
Lapu9g02332 429 PRINTS Ornithine decarboxylase signature 154 176 IPR002433 GO:0006596
Lapu9g02332 429 PRINTS Ornithine decarboxylase signature 381 394 IPR002433 GO:0006596
Lapu9g02332 429 PRINTS Ornithine decarboxylase signature 54 78 IPR002433 GO:0006596
Lapu9g02332 429 PRINTS Ornithine decarboxylase signature 361 371 IPR002433 GO:0006596
Lapu9g02332 429 PRINTS Ornithine decarboxylase signature 80 107 IPR002433 GO:0006596
Lapu9g02332 429 PRINTS Ornithine decarboxylase signature 124 148 IPR002433 GO:0006596
Lapu9g02332 429 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 32 416 IPR002433 GO:0006596
Lapu9g02332 429 SUPERFAMILY Alanine racemase C-terminal domain-like 280 408 IPR009006 GO:0003824
Lapu9g02332 429 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 52 410 IPR009006 GO:0003824
Lapu9g02332 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 102 114 IPR000183 GO:0003824
Lapu9g02332 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 205 218 IPR000183 GO:0003824
Lapu9g02332 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 82 100 IPR000183 GO:0003824
Lapu9g02332 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 394 407 IPR000183 GO:0003824
Lapu9g02332 429 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 285 304 IPR000183 GO:0003824
Lapu9g02332 429 SUPERFAMILY PLP-binding barrel 53 297 IPR029066 -
Lapu9g02332 429 CDD PLPDE_III_ODC 53 410 - -
Lapu9g02332 429 Gene3D Alanine racemase 64 293 IPR029066 -
Lapu9g02332 429 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 82 100 IPR022653 -
Lapu9g02332 429 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 240 257 IPR022657 -
Lapu9g02332 429 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 64 294 IPR022644 GO:0003824
Lapu9g02332 429 FunFam Ornithine decarboxylase 64 293 - -
Lapu9g02332 429 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 295 394 IPR022643 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02332 K01581 - gmx:547682 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02332 9 37880473 37881828 Lapu9g02332 9 37880473 37881828 ECH