Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02326 ATGGCTTTTATAAAATCATGCGCACGTTTGCGCCACTCCCTCTCACCGCTCCTACCACGCACTTTCAAGCTACACTGTTCTTCAGCTTCACTTCCCGAACTTATTCTCCTACCCGATCAAAACGACACATCCCAAACTCCAAACTTGACCTCCGAGGAAACCACCTTAGCCGACAAGCTTCACGCCGCCATCAAAGACCACCAGCGCAGAAACCCCACACCAAACCCTAACGCCCCTCCCCCCACTCCCAACCTTACCATCCCCGACCTCTCCCTCGACTTCTCCTCCCTCTCCGCCGCTCACCCACTCTCTCCCGCTGTCGCCCGCTGCGTCATCGAGAAATGCGGCGCTGTCCGCCACGGCATCCCCTTCCTCCAATCCCTCGCGTTCTTCAACTGGGTCACCGCGGTCGATGGATTTCCCCCCTCGCCGGAGCCCTACGACGAGATGATCGACCTCGCCGGAAAGCTGAGACATTTCGATCTCGCGTGGCACGTCATCGACCTCATGAAGGCTCGCGGCGTCGAAATCAGTGTTCAGACGTTCTCCGCTCTAGTACGACGCTACGTGAGGGCCGGATTATCTGCGGAGGCGGTGCACGCGTTTAACCGCATGGAGGACTATGGCTGCACCCCCGATAAGGTTGCGTTTTCAATTGTGATTAGTAGCTTGTGTAAAAAAAGAAGGGCAAATGAGGCTCAATCGTTTTTTGATAGTCTCAAGCATAAGTTTGAGCCTGATGTTTTAGTTTACACTAGTTTGGTTTATGGGTGGTGTCGTGCTGGTGACATATCTAAGGCTGAAGAGGTGTTTAGTGATATGAAGATGGCTGGGATTAAGCCTAACGTTTATACTTACAGTGCTGTGATTGATTCGTTGTGCCGATGCGGGCAAATTACTCGTGCTCATGATGTTTTCGCCGAGATGATTGATGCAGGGTGTGATCCTAATGCTGTTACTTTCAATAGTTTGATGCGGGTTCATGTGAAGGCTGGGAGGACTGAGAAGGTATTGCAGGTTTACAATCAGATGAAGCGGCTTGGTTGTCCTGCAGATACCATTAGCTACAATTTCATCATTGAAAGTCATTGTAGGGATGAGAATCTTGATGAGGCTGTGAAGATTCTGAATTTGATGGTCAAGAAAGGGGTTGCTCCTAATGCGTCCACTTTCAATTGTGTTTTTGGATGCATAGCTAAGTTGCATGATGTGAATGGTGCGCACAGGATGTATGCTAGAATGAAGGAGCTGAAGTGCCAGCCCAATACGTTGACTTATAATATATTGATGAGGATGTTTGCTGAGTCGAGATCTACTGATATGGTTCTGAAAATGAAGAAGGAAATGGACGAGAATCAGGTTGAACCTAATGTAAACACATACCGGATTTTGATTTCGATGTTTTGTGAAATGAAGCACTGGAACAATGCGTACAAGTTAGTGAAGGAAATGGTTGAAGAAAAATGCCTAAAACCCAATCTGTCAGTTTATGAAAGAGTTCTGGAGCAGCTCAGAAACGCTGGACAGTTGAAAAAGCATGAAGAGTTGGTGGATAAGATGATTGCGAGGGGATTCGTCACTCGCCCTTTGTAG 1593 0.4827 MAFIKSCARLRHSLSPLLPRTFKLHCSSASLPELILLPDQNDTSQTPNLTSEETTLADKLHAAIKDHQRRNPTPNPNAPPPTPNLTIPDLSLDFSSLSAAHPLSPAVARCVIEKCGAVRHGIPFLQSLAFFNWVTAVDGFPPSPEPYDEMIDLAGKLRHFDLAWHVIDLMKARGVEISVQTFSALVRRYVRAGLSAEAVHAFNRMEDYGCTPDKVAFSIVISSLCKKRRANEAQSFFDSLKHKFEPDVLVYTSLVYGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSAVIDSLCRCGQITRAHDVFAEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCPADTISYNFIIESHCRDENLDEAVKILNLMVKKGVAPNASTFNCVFGCIAKLHDVNGAHRMYARMKELKCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDENQVEPNVNTYRILISMFCEMKHWNNAYKLVKEMVEEKCLKPNLSVYERVLEQLRNAGQLKKHEELVDKMIARGFVTRPL* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02326 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Lapu9g02326 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Lapu9g02326 530 Gene3D Tetratricopeptide repeat domain 403 528 IPR011990 GO:0005515
Lapu9g02326 530 Gene3D Tetratricopeptide repeat domain 103 234 IPR011990 GO:0005515
Lapu9g02326 530 Gene3D Tetratricopeptide repeat domain 313 402 IPR011990 GO:0005515
Lapu9g02326 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 243 IPR002885 -
Lapu9g02326 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Lapu9g02326 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Lapu9g02326 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Lapu9g02326 530 Gene3D Tetratricopeptide repeat domain 239 312 IPR011990 GO:0005515
Lapu9g02326 530 SUPERFAMILY TPR-like 181 427 IPR011990 GO:0005515
Lapu9g02326 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Lapu9g02326 530 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 114 241 - -
Lapu9g02326 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Lapu9g02326 530 Pfam PPR repeat family 352 397 IPR002885 -
Lapu9g02326 530 Pfam PPR repeat family 181 226 IPR002885 -
Lapu9g02326 530 Pfam PPR repeat family 421 469 IPR002885 -
Lapu9g02326 530 Pfam PPR repeat family 246 295 IPR002885 -
Lapu9g02326 530 NCBIfam pentatricopeptide repeat 250 283 IPR002885 -
Lapu9g02326 530 NCBIfam pentatricopeptide repeat 390 423 IPR002885 -
Lapu9g02326 530 NCBIfam pentatricopeptide repeat 181 213 IPR002885 -
Lapu9g02326 530 NCBIfam pentatricopeptide repeat 425 458 IPR002885 -
Lapu9g02326 530 NCBIfam pentatricopeptide repeat 284 318 IPR002885 -
Lapu9g02326 530 NCBIfam pentatricopeptide repeat 460 493 IPR002885 -
Lapu9g02326 530 NCBIfam pentatricopeptide repeat 354 388 IPR002885 -
Lapu9g02326 530 NCBIfam pentatricopeptide repeat 148 178 IPR002885 -
Lapu9g02326 530 NCBIfam pentatricopeptide repeat 319 352 IPR002885 -
Lapu9g02326 530 Pfam PPR repeat 319 349 IPR002885 -
Lapu9g02326 530 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02326 Lapu-Chr9 37836991 37839154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02326 137 525 Glycosyltransferase AT1G05670 25.897 7.44e-50 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02326 - - gmx:100800850 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02326 9 37836991 37839154 Lapu9g02326 9 37836991 37839154 ECH