Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02324 ATGCTATCGTTTAACTCATGTGGATGTTGCCGCGTTTCAACATCCAGAGCGTCCCATTTACAATTCCGAATCTCACCTTCTTCTTCATTCTTCCTCTATGCTACGAGCTATAAATTTCGTTCTGCCACAGCGAAGGCTGGTTCTGCTTCCACTGGCAACTCAGACTCCGATGGGGAGAGAAAATTGAACTTCTCCGGTGTGCGCTTGGAGGAGGCTGTCGATAGCAGAATAGGATCTGGAAAACTAAGACTAGATAATTGGATCTCTTCCCGCATCAATGGCATTAGTAGAGCACGCGTTCAATCAAGTATCAAATCGGGACTCGTTCATGTCAATGGCCGTGTCGTTGATAAGAAATCAAAGCATCAACCAGAGCAATATGCTTTGGCTTCTTTCAACGTCAAAGCTGGGGATCAGATCAAATGCACAATCGCAGAGTTGCAGAAGTTGAGGGCTGTGCCAGAAAATATACCTTTGGATATAGTTTATGAAGATGAGCATGTTCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCTCCTGGAAATACGTCGGGGACGCTTGTTAATGGCATTCTTCACCATTGCAATCTTCCAAATGTCGAATTTTCTAAAGAGGAAGCTCTTTCAGATACAGAAGATTCTGATGATGAGGTCAATAGCTATGGCTCCATGGCAAGTTCTTGTGAAGGATCACATTCTAGACTGTCTATCTCATCAATTCGCCCAGGGATTGTACACAGATTGGACAAAGGCACAAGTGGATTACTTGTTGTTGCAAAGGATGAACATTCACATATGAAATTATCAGAGCAATTCAAGCAACGCACCATCAAGAGGGTTTATGTTAGTCTTACTGCTGGGGTACCCACACCGGTTTCTGGGCGAGTTGAGGTTCCAGTTGGCCGTGATCTTAATAACAGATTGCGTATGACTGCTGTAGCTGGACCAGTTAATTCTAGAAAGGCTCGTCATGCTTCTAGTAGGTACAAAGTAATTGAGATACTTGCAGGGGGAAGTTGTTCATTGGTTGAGTGGAAGTTGGAAACTGGACGCACTCATCAGATCCGTGCTCATGCTAAGTATTTGGGAGTTCCTTTACTCGGTGATGAGGTGTATGGAGGGACGAAAAGCATGGTCTTGTCACTGCTAAGGCCCCGAACTCCCATCAGTTTGCATGGCAAAATTGTACAAATGGTTTCTAGGCTAGATAGGCCTTGCCTTCATGCTTTGACACTGGGGTTTGAGCATCCCCATACAGGGGAGCAGGTGCACTTTTCATGTGAACCCCCTGTAGACTTCGACGAGATTCTGAGCCAGCTTCGTAGAATTGGCAGTGAGAGTGTTTCTTTCTCAAAGCGTTCAAATTTATGA 1380 0.4478 MLSFNSCGCCRVSTSRASHLQFRISPSSSFFLYATSYKFRSATAKAGSASTGNSDSDGERKLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIKSGLVHVNGRVVDKKSKHQPEQYALASFNVKAGDQIKCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEALSDTEDSDDEVNSYGSMASSCEGSHSRLSISSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRVYVSLTAGVPTPVSGRVEVPVGRDLNNRLRMTAVAGPVNSRKARHASSRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRTPISLHGKIVQMVSRLDRPCLHALTLGFEHPHTGEQVHFSCEPPVDFDEILSQLRRIGSESVSFSKRSNL* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02324 459 Gene3D Pseudouridine synthase 150 432 - -
Lapu9g02324 459 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 87 440 - -
Lapu9g02324 459 Pfam S4 domain 83 120 IPR002942 GO:0003723
Lapu9g02324 459 CDD S4 83 172 - -
Lapu9g02324 459 Pfam RNA pseudouridylate synthase 167 362 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lapu9g02324 459 Gene3D - 78 149 IPR036986 GO:0003723
Lapu9g02324 459 ProSiteProfiles S4 RNA-binding domain profile. 82 166 - -
Lapu9g02324 459 SMART s4_6 82 158 IPR002942 GO:0003723
Lapu9g02324 459 SUPERFAMILY Alpha-L RNA-binding motif 81 180 - -
Lapu9g02324 459 ProSitePatterns Rlu family of pseudouridine synthase signature. 248 262 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lapu9g02324 459 CDD PseudoU_synth_RluA_like 168 417 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lapu9g02324 459 SUPERFAMILY Pseudouridine synthase 153 444 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02324 Lapu-Chr9 37822716 37828550 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02324 K06180 - gmx:100810383 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02324 9 37822716 37828550 Lapu9g02324 9 37822716 37828550 ECH