Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu9g02279 | ATGTCTGCATCTGAAGCGGAGAAGAAGGTGGAGGAAGAGAAGGAGGAGGTCAAAGGGGGAGAACTCTTGTTCTGCGGTGCCACGTGTTGGGATATCATTGGCCGGCGCAAAGGCGCCGTTGACGGCAACCTCGTCTCTCCCTCGCGTCTCCGTCCTCTCGTCGGTGTCGATATTCGTTACGTCGCGGCCGGTTGCGTGTCTTGTCATTGCGTTGCATTGGACGTCGAAGGGCGCTGCTATACTTGGGGACGGAATGAGAAAGGGCAACTGGGTCATGGAGATACGATTCAGCGTGATAGACCAACTGTCGTGTCTGAACTTTCCAAGTACAAAATTGTCAAAGCTGGAGCAGGGAGAAGCCATAGTGTGGTTGTTACGGAGGATGGAAATTCCCTGGCCTTTGGATGGAACAAGCATGGGCAGCTAGGTTCGGGTTCTGTGAGAAATGAAATTGAGTCATCACCTGTTCGCTGTCTTGTGTCTGAAGTAAAACATACTGCTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCCATCGAAGGAGTTTCTATACTAACTGCTGGGCTTCCACAGTATGGACAGCTTGGGCATGGAACAGATAATGAGTATAATTCCAAAGACAGCTCTGTGAGGTTGGTTTATGAACCCCAGCCTCGCCCTCGAGGGATTGCTGCTCTTGCTGGGGAAACAGTTGTCAAAGTGGCATGCGGAACAAATCATACAGTGGCTGTGGATAAGAATGGCTTCGTCTACACGTGGGGTTTTGGTGGTTATGGAAGACTAGGACATAGGGAGCAGAAGGATGAGTGGGCCCCACGTCGTGTTGATGTTTTTCAGAACAGAAATCTTTTGCCGCCTGATGCCATTATATCTGCTGGTTCTGTGAGTTCTTCATGTACTGCAGGTGGTGGGCAGTTGTACATGTGGGGCAAATTAAAGAACACCGGTGATGACTGGATGTATCCGAAGCCTCTAATGGATTTAAGTGGGTGGAATATACGGTGCATGGATTCAGGCAATATGCATCATTTTGTTGGGGCTGATTCCTCTTGCATAAGTTGGGGACTTGCTCAGAATGGAGAGCTGGGATATGGACCTACTGGACAGAAGTCTTCAGCTGTACCGAAGAAGGTTGATATACTTGAGGGTATGCATGTAATAAGTGTTGCTTGTGGTATGGGTCATTCCATGGTTATTGTTGATAGAGCAAATGTTGCTGATCGACTTGACCAGCTTGATATATATGATGGGAAAGCTGTTGGTGAAGGTAATGAGGCTGTAACTGCAACTCCAGTTCCCAAGCAGGCTGCAAAAAAGGGTGCGAAGGCAGCTGACAATTCGAAGAAGAGGAAAAAGTCAAAAGATTCATCGGAGTCAGAAGAGGAAGAGGAAGAGGATGCTGAAGAAAGTGATGATAGTGAGGAGGATGAAATTAATGGTGAGGCTGAGGTGAAAAGGAGGCGTGGTGGTTCTGGTAAAGGCCGGGGTAAGGCATCCAAAACATCCAGTGGCAAGGGAAAGGGCTCGCCTTCAAAGGGAAAAGGCGGTGGCCGAGGACGCGGTGGGACTTCAGCTAATAAGCACAGTTCTAAATCCCCTCAGGTGAAATCTGGTAGGAGAGGAAGACCCCGTAAGTCATCATAA | 1644 | 0.4884 | MSASEAEKKVEEEKEEVKGGELLFCGATCWDIIGRRKGAVDGNLVSPSRLRPLVGVDIRYVAAGCVSCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKIVKAGAGRSHSVVVTEDGNSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSEVKHTACGGDFTVWLSSIEGVSILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEPQPRPRGIAALAGETVVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWAPRRVDVFQNRNLLPPDAIISAGSVSSSCTAGGGQLYMWGKLKNTGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADSSCISWGLAQNGELGYGPTGQKSSAVPKKVDILEGMHVISVACGMGHSMVIVDRANVADRLDQLDIYDGKAVGEGNEAVTATPVPKQAAKKGAKAADNSKKRKKSKDSSESEEEEEEDAEESDDSEEDEINGEAEVKRRRGGSGKGRGKASKTSSGKGKGSPSKGKGGGRGRGGTSANKHSSKSPQVKSGRRGRPRKSS* | 548 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu9g02279 | 547 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 182 | 247 | IPR000408 | - | |
| Lapu9g02279 | 547 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 389 | 399 | IPR000408 | - | |
| Lapu9g02279 | 547 | Gene3D | - | 11 | 158 | IPR009091 | - | |
| Lapu9g02279 | 547 | Coils | Coil | 450 | 477 | - | - | |
| Lapu9g02279 | 547 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 77 | 128 | IPR000408 | - | |
| Lapu9g02279 | 547 | MobiDBLite | consensus disorder prediction | 459 | 478 | - | - | |
| Lapu9g02279 | 547 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 76 | 125 | IPR000408 | - | |
| Lapu9g02279 | 547 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 185 | 244 | IPR000408 | - | |
| Lapu9g02279 | 547 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 247 | 285 | IPR000408 | - | |
| Lapu9g02279 | 547 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 353 | 399 | IPR000408 | - | |
| Lapu9g02279 | 547 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 128 | 174 | IPR000408 | - | |
| Lapu9g02279 | 547 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 349 | 402 | IPR000408 | - | |
| Lapu9g02279 | 547 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 248 | 303 | IPR000408 | - | |
| Lapu9g02279 | 547 | SUPERFAMILY | RCC1/BLIP-II | 19 | 402 | IPR009091 | - | |
| Lapu9g02279 | 547 | Gene3D | - | 160 | 429 | IPR009091 | - | |
| Lapu9g02279 | 547 | MobiDBLite | consensus disorder prediction | 426 | 547 | - | - | |
| Lapu9g02279 | 547 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 115 | 125 | IPR000408 | - | |
| Lapu9g02279 | 547 | Coils | Coil | 3 | 23 | - | - | |
| Lapu9g02279 | 547 | PANTHER | PROTEIN RCC2 | 6 | 515 | IPR028641 | - | |
| Lapu9g02279 | 547 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 129 | 179 | IPR000408 | - | |
| Lapu9g02279 | 547 | MobiDBLite | consensus disorder prediction | 533 | 547 | - | - | |
| Lapu9g02279 | 547 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 234 | 244 | IPR000408 | - | |
| Lapu9g02279 | 547 | PRINTS | Chromosome condensation regulator RCC1 signature | 78 | 94 | IPR000408 | - | |
| Lapu9g02279 | 547 | PRINTS | Chromosome condensation regulator RCC1 signature | 234 | 250 | IPR000408 | - | |
| Lapu9g02279 | 547 | PRINTS | Chromosome condensation regulator RCC1 signature | 131 | 147 | IPR000408 | - | |
| Lapu9g02279 | 547 | PRINTS | Chromosome condensation regulator RCC1 signature | 112 | 125 | IPR000408 | - | |
| Lapu9g02279 | 547 | PRINTS | Chromosome condensation regulator RCC1 signature | 250 | 264 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu9g02279 | Lapu-Chr9 | 37365781 | 37373582 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu9g02279 | - | - | pvu:PHAVU_009G015100g | 873.618 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lapu9g02279 | 9 | 37365781 | 37373582 | Lapu9g02279 | 9 | 37365781 | 37373582 | ECH |