Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02275 ATGAGTAGAAGACCACCTCCTGATCCCGTGGCAGTGCTACGAGGCCATCGAGCTTCGGTCACAGACATTTCTTTTCATCCCTTTAAGCCGATATTATTCTCTGGTTCCGCTGATGGTGAAGTGCGGATTTGGGATACCCTTCAGCATCGAACTGTGTCATCTGCATGGTTACATAGTGCTGCACATGGTATTGTTGCTGTTGCCTGTGGTTCTTCCCTCGGAACCAATAAATTTGCCAGCCAGGGTAGAGATGGAACTGTAAAAATTTGGGAATTTGGTGATGCTGGTTTGTCAAGGATCCCATCACTTACAATCAAGACAAACAGTTACCACTTTTGCAAATTTTCCATGATGAAGAATGATTTTGTTTGGTCAACAGAAGGCAAAGAATCGGAAGATTGTTACAGAACAGAGCCAGGAGAAACGTCTGATAGAGAAATTCTGGAGGTTAAAAGAGACGAGGCGTACACCAATAGTTGTTCTAAAAGCTCTGGAGATAATACATGTAATGAAGGGCTACATTATATGGCTTTGTCAGGGGAGAACTCTTCGGAGGTTGAAATTTGGGATCTCAAGTCCGTTAAAAAAATTGCACAGCTTCCTTCAAGCAACCCCAGTAACCCTTCAAGTGCTTGCAAGAAAGGGATGTGCATGGCACTTCAATTATTTTTATCATCTGAATCACAAGGATTTTTAAATGTCTTGGCTGGATATGAGGATGGTTCCATGCTTTGGTGGGATATACGGAATCCTAGAGTTCCAGTAACTTCTGTAAAGTTTCATTCTGAGCCAGTTTTGAGCATCTGTATTGACGGGTCCTGCAAAGGGGGTATCTCAGGAGCTGCAGACGACAAAATTGTTATGTACAGCTTGGATCATGCTTCGGGTACATGTGTAGTAAAGAAAGAAATCACTTTGGAGCGACCAGGCATATCAGGCATCTCGATTCGACCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGATCACAGGGTGAGGATATATAATTACCGCAAAGGAAATGCTTTAGCTATTTTGAAGTATCACCATGGCACATGCAATGCTGTAACTTATTCGTCTGACTGTAAACTTATGGCCTCTGCATCGGAAGACACAACCGTGGGGCTATGGGAATTGTATCCTCCTCGAATATGA 1155 0.4338 MSRRPPPDPVAVLRGHRASVTDISFHPFKPILFSGSADGEVRIWDTLQHRTVSSAWLHSAAHGIVAVACGSSLGTNKFASQGRDGTVKIWEFGDAGLSRIPSLTIKTNSYHFCKFSMMKNDFVWSTEGKESEDCYRTEPGETSDREILEVKRDEAYTNSCSKSSGDNTCNEGLHYMALSGENSSEVEIWDLKSVKKIAQLPSSNPSNPSSACKKGMCMALQLFLSSESQGFLNVLAGYEDGSMLWWDIRNPRVPVTSVKFHSEPVLSICIDGSCKGGISGAADDKIVMYSLDHASGTCVVKKEITLERPGISGISIRPDGKIAATAGWDHRVRIYNYRKGNALAILKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPRI* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02275 384 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Lapu9g02275 384 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Lapu9g02275 384 PRINTS G protein beta WD-40 repeat signature 365 379 IPR020472 -
Lapu9g02275 384 PANTHER TRANSDUCIN BETA-LIKE 3 4 379 - -
Lapu9g02275 384 Gene3D - 105 383 IPR015943 GO:0005515
Lapu9g02275 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 384 - -
Lapu9g02275 384 SMART WD40_4 251 290 IPR001680 GO:0005515
Lapu9g02275 384 SMART WD40_4 339 378 IPR001680 GO:0005515
Lapu9g02275 384 SMART WD40_4 48 91 IPR001680 GO:0005515
Lapu9g02275 384 SMART WD40_4 6 45 IPR001680 GO:0005515
Lapu9g02275 384 SMART WD40_4 297 336 IPR001680 GO:0005515
Lapu9g02275 384 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Lapu9g02275 384 Pfam WD domain, G-beta repeat 311 336 IPR001680 GO:0005515
Lapu9g02275 384 Pfam WD domain, G-beta repeat 343 377 IPR001680 GO:0005515
Lapu9g02275 384 Gene3D - 2 95 IPR015943 GO:0005515
Lapu9g02275 384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Lapu9g02275 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Lapu9g02275 384 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 384 IPR001680 GO:0005515
Lapu9g02275 384 SUPERFAMILY WD40 repeat-like 4 378 IPR036322 GO:0005515
Lapu9g02275 384 ProSitePatterns Trp-Asp (WD) repeats signature. 365 379 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02275 Lapu-Chr9 37321021 37329150 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02275 234 379 Miscellaneous Gene Families AT5G08390 26.027 5.29e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02275 K24770 - gmx:100800482 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02275 9 37321021 37329150 Lapu9g02275 9 37321021 37329150 ECH