Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02011 ATGAAGAAGGCAAAGAAGAGTGCGGAAGAAAATGGGGGAAAGTTCAGGGGTGCGGAGAGGTCAGCGTATTTCGCACGCAGAGAGGCAGCGAAGGTGCTGAGAGTGGTTCTGGAAGGAGACGCTAAGCGCCGCGCTCTTGCCTCCATCAAATCCCTCATCTATCAACCTTCCGTCAGGAACAAGAAGGCTACCTTCGCTCTTCTTTGTCAAACCCTAAAACATCTTCCCATCATCAAGGATGTCTTGGAAGCTGCTTCCATTCTCAACACCAAGTGGAAGAGGCAACGAGAATTGGTTTATATCATTGTCTACGATATCCTTTTTGGCCAGGCGGTTTCACTAGTTGGTGATGCAGAGAAGTACCTTATGCGCCACGAAGACGCCCTACGTTCAACTCTTAAACAGATTTTGTTACAGAGAAATGTGAAGACTGTTAAACAGTTGGTTGCTCTGAATGAAGTTCCTGATGTTTCTGTACCTCGGTATGTTCGTGTAAATACACTTAAACTGGATGTTGATTCTGCCTTGCTTGAACTTCAGAAAAATTACTCGGTTCAAAAGGATAATCTACTGCCTGAATTACTGATACTCCCACCAGGCACTGATTTGCATGATCATCCTCTTGTGAAGAATGGCAGTATCTTTATGCAAGGTAGGGCAAGTTCCATGGCAGCACCAGCTCTTAGCCCTCAACCAGGATGGGAGGTTATTGATGCATGTGCAGCACCGGGAAACAAAACTATTCACCTGGCTGCCCTTATGAAGAGAAGGGGCAAGATTATAGCATGTGAGCTGAAAAAGGAAAGAGTCAAGCGCTTGAAAGACACCATAAAGCTATCTGGTGCTTCTAACATTCAAGTCCTGAATGAGGATTTCTTGAACATAAATCCCAAGGATCCTTCGTATTCTAAGGTGAACGCAATTCTCTTGGATCCTTCCTGCTCTGGTTCCGGTACTGCTGCCTCAAGACTAGACCATCTGCTCCCATCTAAAGCAGCAGGTCAGGATACTGATATGGAAAGATTGAATAAGCTTGCAACTTTCCAGAGAAAGGCTCTTCAGCATGCTTTACTTTTTCCAGCTCTTGAAAGAATTGTCTATAGTACATGTTCAATCAACCAAATCGAGAATGAAGATGTCATCAAATCTGTTCTTCCCTTTGCCGAATCATATGGATTTCAATTGGCAAAACCCTTCCCCGAGTGGCAATGCCGTGGTCTTCCAGTGTTTGAAGGCTCTGAATGCCTGATTCGCACAGATCCAGCTGAGCATGGCGAGGGTTTCTTTATTGCCTTGTTTGCTAGGAAAGAAGCAATCTCTTCGGAGTGTTCGAATAAAAATGAAACTAGAATTTCCCACAGCACTCCCGGAATTAAAAACCCGCAAAGAAAGAGGAAACGTATTCCTTTTATTAGCACTAACCCATTCAAAATGTGGTTATATGATCAACTGAAGCTGTAG 1461 0.4428 MKKAKKSAEENGGKFRGAERSAYFARREAAKVLRVVLEGDAKRRALASIKSLIYQPSVRNKKATFALLCQTLKHLPIIKDVLEAASILNTKWKRQRELVYIIVYDILFGQAVSLVGDAEKYLMRHEDALRSTLKQILLQRNVKTVKQLVALNEVPDVSVPRYVRVNTLKLDVDSALLELQKNYSVQKDNLLPELLILPPGTDLHDHPLVKNGSIFMQGRASSMAAPALSPQPGWEVIDACAAPGNKTIHLAALMKRRGKIIACELKKERVKRLKDTIKLSGASNIQVLNEDFLNINPKDPSYSKVNAILLDPSCSGSGTAASRLDHLLPSKAAGQDTDMERLNKLATFQRKALQHALLFPALERIVYSTCSINQIENEDVIKSVLPFAESYGFQLAKPFPEWQCRGLPVFEGSECLIRTDPAEHGEGFFIALFARKEAISSECSNKNETRISHSTPGIKNPQRKRKRIPFISTNPFKMWLYDQLKL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02011 486 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 28 435 IPR023267 GO:0001510
Lapu9g02011 486 Pfam 16S rRNA methyltransferase RsmB/F 227 433 IPR001678 GO:0008168
Lapu9g02011 486 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 160 435 IPR029063 -
Lapu9g02011 486 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 151 436 IPR001678 GO:0008168
Lapu9g02011 486 Gene3D Sun protein; domain 3 152 216 - -
Lapu9g02011 486 PRINTS RNA (C5-cytosine) methyltransferase signature 306 318 IPR023267 GO:0001510
Lapu9g02011 486 PRINTS RNA (C5-cytosine) methyltransferase signature 362 378 IPR023267 GO:0001510
Lapu9g02011 486 PRINTS RNA (C5-cytosine) methyltransferase signature 237 247 IPR023267 GO:0001510
Lapu9g02011 486 PRINTS RNA (C5-cytosine) methyltransferase signature 418 435 IPR023267 GO:0001510
Lapu9g02011 486 FunFam Putative 28S rRNA (Cytosine-C(5))-methyltransferase 152 216 - -
Lapu9g02011 486 CDD AdoMet_MTases 236 324 - -
Lapu9g02011 486 FunFam Methyltransferase NSUN5, putative 217 441 - -
Lapu9g02011 486 Gene3D Vaccinia Virus protein VP39 217 442 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g02011 Lapu-Chr9 34927796 34932774 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02011 K15264 - gmx:100775620 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02011 9 34927796 34932774 Lapu9g02011 9 34927796 34932774 ECH