Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g02006 ATGATTCGTGGGTTTTGCAAAGTGGGGATGGTCGAGAGTGCGCGCAAGGTGTTTGACGAAATGCGCTGCGAACCCAACATCGTCACTTACAACACGTTGATCCACGGGTTTTGTAAGAGGGGTGACATGGAGGATGCCAGATGGGTTTTTGACAGACTGGTGGAGAGTAAGAGCTGTGAGCCGGATGTGCTGAGTTTCACCACTTTGATTTGTGGGTATTCGAAGATAGGTGAATTCCAAAAGGCGGTGGAGTGTCTGAAGGAGATGGCGGAACGAGGGTGTTCTCCGAATGTTGTGACCTACAATGCGTTGATTGAAGGTCTTTGTTTGAGCAGAGAAGTGGATGAGGCAAAGAAGATGATGAGTAGGATGCGGTTGAATGGTTTGAAAGACAACGTCGCCACAAACACTAGCTTGTTGAAGGGGCTGTGTATTGTGGGAAAGTCTGATGAAGCTTTTAAGCATTTCAGGCAAATGGTTAGTCGTGGGATGAAGCCGGATGTGAAAGCGTATGGGGTTGTTGTGAATGAGTATTGCAAGATTGGAAAACCAAGAGAAGCAGTGTCACTTCTGAGAGAAATGGTGGCGAAGGGTGTTAAGCCAAGTGTGTCAAGCTTCAATGCAGTTTTTAGAATTCTTGTAGATGAGGAGAAGATTGATGAAGGTGTTCTTGTTTTGAAGCAGATGAGTCAGATGGGATGCTCACCCAACTTCTTGTCATATTCCATATTGATATGTGGCCTCTGTAAAGTAAAGGGTAGGATGCAGGCAGTTGAAGAGCTAGTTTCGGAAATGCTTCAGAAGGGACATAACCTGGATGCCTCTATGTATAACTGCTTACTTGGGGGATATTGTGAAGACGGGGATGAAGAAATGGCACTACAGACATTTTATGACATTATGAACAAGAACTTTGTAATAAACCAAGACATTTTCGGCACTTTTGTGAAGGTGTTGTGCGCAAAGGGAAAATTGAAAGAGGCGGAGACAGCGTTTGAGGATATGCTTGTGCAGGGGATTCCAGTTAAGTGGAACAATAACGTGATTTTCGGATAA 1056 0.4479 MIRGFCKVGMVESARKVFDEMRCEPNIVTYNTLIHGFCKRGDMEDARWVFDRLVESKSCEPDVLSFTTLICGYSKIGEFQKAVECLKEMAERGCSPNVVTYNALIEGLCLSREVDEAKKMMSRMRLNGLKDNVATNTSLLKGLCIVGKSDEAFKHFRQMVSRGMKPDVKAYGVVVNEYCKIGKPREAVSLLREMVAKGVKPSVSSFNAVFRILVDEEKIDEGVLVLKQMSQMGCSPNFLSYSILICGLCKVKGRMQAVEELVSEMLQKGHNLDASMYNCLLGGYCEDGDEEMALQTFYDIMNKNFVINQDIFGTFVKVLCAKGKLKEAETAFEDMLVQGIPVKWNNNVIFG* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g02006 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 26 61 IPR002885 -
Lapu9g02006 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 272 IPR002885 -
Lapu9g02006 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Lapu9g02006 351 Gene3D Tetratricopeptide repeat domain 1 53 IPR011990 GO:0005515
Lapu9g02006 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Lapu9g02006 351 Pfam PPR repeat family 61 109 IPR002885 -
Lapu9g02006 351 Pfam PPR repeat family 132 180 IPR002885 -
Lapu9g02006 351 Pfam PPR repeat family 201 250 IPR002885 -
Lapu9g02006 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Lapu9g02006 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 62 96 IPR002885 -
Lapu9g02006 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Lapu9g02006 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Lapu9g02006 351 Pfam PPR repeat 23 52 IPR002885 -
Lapu9g02006 351 Pfam PPR repeat 1 22 IPR002885 -
Lapu9g02006 351 Gene3D Tetratricopeptide repeat domain 54 147 IPR011990 GO:0005515
Lapu9g02006 351 Gene3D Tetratricopeptide repeat domain 253 349 IPR011990 GO:0005515
Lapu9g02006 351 Gene3D Tetratricopeptide repeat domain 148 252 IPR011990 GO:0005515
Lapu9g02006 351 Pfam PPR repeat 276 304 IPR002885 -
Lapu9g02006 351 Pfam PPR repeat 312 340 IPR002885 -
Lapu9g02006 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Lapu9g02006 351 NCBIfam pentatricopeptide repeat 28 63 IPR002885 -
Lapu9g02006 351 NCBIfam pentatricopeptide repeat 205 237 IPR002885 -
Lapu9g02006 351 NCBIfam pentatricopeptide repeat 170 203 IPR002885 -
Lapu9g02006 351 NCBIfam pentatricopeptide repeat 311 341 IPR002885 -
Lapu9g02006 351 NCBIfam pentatricopeptide repeat 276 308 IPR002885 -
Lapu9g02006 351 NCBIfam pentatricopeptide repeat 137 168 IPR002885 -
Lapu9g02006 351 NCBIfam pentatricopeptide repeat 65 98 IPR002885 -
Lapu9g02006 351 NCBIfam pentatricopeptide repeat 99 129 IPR002885 -
Lapu9g02006 351 NCBIfam pentatricopeptide repeat 1 25 IPR002885 -
Lapu9g02006 351 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 1 221 - -
Lapu9g02006 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 24 IPR002885 -
Lapu9g02006 351 SUPERFAMILY TPR-like 26 198 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g02006 1 340 Glycosyltransferase AT1G05670 31.778 3.24e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g02006 - - gmx:100802054 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g02006 9 34899281 34900936 Lapu9g02006 9 34899281 34900936 ECH