Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01988 ATGGGTAATATACAAGTATATCTGGCCATCATTCTAGCATGGCTTACTTTGTTTGAAGGAAATATGATGCTTGTTAATGGTGGTTTGGATTACAAGGAGGCTCTCACCAAGTCCCTTATTTTCCTTGAGGCACAACGTTCAGGGAAACTCCCCTCAAATAATAGGGTGCCCTGGAGAGGAGACTCGGCACTCGATGATGGAAAACTCGTTAACGTGGACCTTGTTGGGGGATACTACGATGCAGGGGACAATGTGAAATATGGTCTCCCCATGGCTTTCACCGTTACTACGCTAGCATGGGCTGCTATTTTTTACAAGTCAGAATTTAAAGCAGCAAAAGAGTTGGATAATCTTCACGATGCCATTCGTTGGGGTACCGATTATTTTCTCAAAGCTAGTTCTCGACACAAAAGATTATACGTGGAGGTAGGGGACCCGGAAGAGGATCACCATTGTTGGATTTCACCAGAACATATGAAGACAAAGAGAACGGTTAAGATGATTGGTGAAGGCACCGCCGGGAGTGAAATCGCAGCTGAAACTGCAGCTGCAATGGCAGCTTCTTCCATCATTTTTAGACCCAAAGATCGTAAATATGCTCGTAGTCTTCTCAACAAAGCTAAATTGCTTTTCCAAATGGCGAAATCGCATAAAGGAACCTATGATGGAGAGTGTCCCTTCTACTGCTCTTATTCCGGCTATAATGATGAAATGATGTGGGCAGCAACATGGCTATACGTAGCTACGAGGAAGTCAATGTATATCAAGTACGTATTAGAACAATCCAAGAGTGCTTGTGTTGCAGAATTTAGTTGGGACCTTAAATATGCTGGAGCTCAAGTCCTTCTTAGCCAGTTATATTTCGAAGGTGAAAAGAAGTTCCAGACATTCAAAAACCATGCAGAAAGTTTCATGTGCTCCGTCCTTCCTGATAGTCCCTACCACCAGATTACAATGTCTCCTGGTGGCTATATTCATTTGAGAAACGGAGCCAACTCGCAGTATGCAACGAGCACTGCTTTCTTGTTCAGTGTATATAGTGACTTGCTTGACAAATACAACGAAAAAGTCGTTTGTGGAGACAAAAAGTTCAGCTCTTCCCATCTCCTTGCTTTTGCTAAGAAACAAATGGATTACATTCTGGGGAAAAATCCCGAAGGAAGATCGTACATGGTAGGATTTGGAAAGAACCCACCAACGCAAGCTCACCATAGAGGTGCTTCGGTGCCGAAACTGAAAAAGGGTGAAGAAGATGTGCCTTGTGGCGAGACTTTCTCAAAATGGTTTAAGAAAGATGAACCTAACCCCCATGAACTCACTGGTGCCATTGTGGGTGGACCTGACCGAAGCGACAAGTTCAAGGACAAACGTTGGGAGTCACCCTACACTGAACCATGCACCTACGTCAATTCCCTAGCTGCTGGAGTTCTAGCTAAGCTTGCATCTTTGTCTTGA 1455 0.4405 MGNIQVYLAIILAWLTLFEGNMMLVNGGLDYKEALTKSLIFLEAQRSGKLPSNNRVPWRGDSALDDGKLVNVDLVGGYYDAGDNVKYGLPMAFTVTTLAWAAIFYKSEFKAAKELDNLHDAIRWGTDYFLKASSRHKRLYVEVGDPEEDHHCWISPEHMKTKRTVKMIGEGTAGSEIAAETAAAMAASSIIFRPKDRKYARSLLNKAKLLFQMAKSHKGTYDGECPFYCSYSGYNDEMMWAATWLYVATRKSMYIKYVLEQSKSACVAEFSWDLKYAGAQVLLSQLYFEGEKKFQTFKNHAESFMCSVLPDSPYHQITMSPGGYIHLRNGANSQYATSTAFLFSVYSDLLDKYNEKVVCGDKKFSSSHLLAFAKKQMDYILGKNPEGRSYMVGFGKNPPTQAHHRGASVPKLKKGEEDVPCGETFSKWFKKDEPNPHELTGAIVGGPDRSDKFKDKRWESPYTEPCTYVNSLAAGVLAKLASLS* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01988 484 FunFam Endoglucanase 28 484 - -
Lapu9g01988 484 PANTHER ENDO-1,4-BETA-GLUCANASE 20 482 - -
Lapu9g01988 484 Gene3D - 26 484 IPR012341 GO:0005975
Lapu9g01988 484 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 379 405 IPR018221 -
Lapu9g01988 484 Pfam Glycosyl hydrolase family 9 31 477 IPR001701 GO:0004553|GO:0005975
Lapu9g01988 484 SUPERFAMILY Six-hairpin glycosidases 30 481 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01988 Lapu-Chr9 34722096 34730887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01988 21 482 Glycoside Hydrolase AT3G43860 69.114 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01988 K01179 - gmx:100811509 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01988 9 34722096 34730887 Lapu9g01988 9 34722096 34730887 ECH