Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01970 ATGCTTGTCTCGGGAGTGTCCTCATCATCATGGGATCTCAAATGGCTCCTGCAATTCGTGTTCTCCGCGTTCGTCTTGGCGATGGGGTTGCACGCGCTCGTGAAGAACACCGCCTCCAAGTACTTCGAGGTTGACGCCACTTTCGAAGGGGAACACCACCACCGTGACGCCATGCCCGGTCTTCTCATGGACGATTCTCTCTGCGCCGTCTGTCGCAACCCCGGTAGCAAGAAGTGTTCGCGATGCAAATCCGTTCGTTATTGTTCACAAGCATGCCAACAGGCGCACTGGAAATCCGAGCATAAGATGAGATGCAAGGAGTTTCAAATGCAAGGAGTTTCACAAACCGGATTAACTAATCGAGAGTTCAAAGCTTCTGCTGCTGTGAATAGAAGTACAACATCAATTGCTCTCATTCCTGAATGTGGTCGCGGAATTTCCAGGCCTATCAAGGAGCCTAAGGATGTTCTTTTTCCTTATGATGATTTTGTCAATTTGTTTAACTGGGACAAGCCAGGATTTCCTCCGTGTGGACTTCTAAATTGTGGAAACAGCTGCTTTGCAAATGTGGTTCTCCAATGTCTCTCTTTCACAAGGCCACTTATTGCCTACCTATTGGAGAAGGGGCACCGCAGTGAATGCTGTCATAACGATTGGTGCTTTCTATGCGAATTTGAAACCCATGTTGAAAAAGCAAGGCTAAGTTCTAAAGCGTTTTCTCCAATGAATATTCTGTCTCGTTTGCCTAATATTGGTGGTACACTGGGTTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTTCCATTGATGCTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTTCCTCCCAAGCATCAAGAAACTACTCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGTACCGAATGTGAGAAGAATTCAAATCAATATGAAAATATGATGGACTTGACAGTCGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGCCAAAGAGTGGCTTCATGGGGATAATATGTATAAATGTGATGGGTGCAAGGGCTATGTCAAGGCATGGAAACGTCTCACAGTTAAACGACCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTCAACAAGAGAGTAGCTTTCCCTGAGACTTTAGACCTTAGCCCGTACATGAGTGAAGTTGGAGATGGATCTGATATTTATAAGCTATATGCTGTTGTAGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCTGTGGGAACTGGTACAGAGTAGATGATTGGAAGGTCGTTAGAGTGGAGTTGGAAGAGGTTCTTTCTCAGGGCGCATATATGCTGTTGTATAGCAGGGTTCATGCTCGACCATCAGGACTTCAAAGTATCCTGTCGTCAGATACAGCAGAAGTGCAAACAGTCAAATCAGAGGTGCAGCCTAGCCCAACTGAACAAGCTGAATGCCTCTCGGAATTAAAAACTGAGACTCACAGTGGAGGATGTGAGTCTTCTCCATCTAACAGTAGTCCAGAATTAATGGTTCGCTTCGAAAACATGATGCCCTTGACTGAAATGAACTCTGGAGTTAAAAGAGAGCAGTCGAAGGATGTTGAAATTATTGATGTAAATGCTAATGAGTCTGTCTGTAATGGAGTTGAATCATCTTATATGCACGGTTCTGAAGCTGTCAAAGATCTGGGGGACGTTGAAGATTCAGATGGTTCAAATACAAGCTCATCTGTTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGACAGTGATTTGGCTAAGTCGAGCCCTACTTCGTGTTTGCCTAATGGCTCTTGTGTTTCAGTGGATTATGAAGATGCAAGGGAAGATTCAGATTCAAAGCATGTAGAAGAGATTAAATGCAAAGTAACAGCAAATGGCTTTGCAAATCATAGCAACGGTTATGTCAATGCAAACAAATATGATGATGTACCAGTGGAAGACGGTGATGGTTCTTTTTCCACTGAAACAACACCCTCAGCTGAAAAACATCAATTTAAGGGGAGATTGGCTTCCGACAACGACAAAGGAAATAGAGTTAAGAAAGTGGAAATATGA 2184 0.4313 MLVSGVSSSSWDLKWLLQFVFSAFVLAMGLHALVKNTASKYFEVDATFEGEHHHRDAMPGLLMDDSLCAVCRNPGSKKCSRCKSVRYCSQACQQAHWKSEHKMRCKEFQMQGVSQTGLTNREFKASAAVNRSTTSIALIPECGRGISRPIKEPKDVLFPYDDFVNLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRSECCHNDWCFLCEFETHVEKARLSSKAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDAMQSVCLDEFGGEKAVPPKHQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKRPPNILTIALKRFQSGRFGKLNKRVAFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFCGNWYRVDDWKVVRVELEEVLSQGAYMLLYSRVHARPSGLQSILSSDTAEVQTVKSEVQPSPTEQAECLSELKTETHSGGCESSPSNSSPELMVRFENMMPLTEMNSGVKREQSKDVEIIDVNANESVCNGVESSYMHGSEAVKDLGDVEDSDGSNTSSSVLEEISVCMEEQDDSDLAKSSPTSCLPNGSCVSVDYEDAREDSDSKHVEEIKCKVTANGFANHSNGYVNANKYDDVPVEDGDGSFSTETTPSAEKHQFKGRLASDNDKGNRVKKVEI* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01970 727 FunFam Ubiquitin carboxyl-terminal hydrolase 15 60 109 - -
Lapu9g01970 727 ProSiteProfiles Zinc finger MYND-type profile. 68 105 IPR002893 -
Lapu9g01970 727 MobiDBLite consensus disorder prediction 704 727 - -
Lapu9g01970 727 Pfam Ubiquitin carboxyl-terminal hydrolase 177 480 IPR001394 GO:0004843|GO:0016579
Lapu9g01970 727 CDD Peptidase_C19E 176 481 - -
Lapu9g01970 727 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 178 193 IPR018200 GO:0004843|GO:0006511
Lapu9g01970 727 SUPERFAMILY HIT/MYND zinc finger-like 65 108 - -
Lapu9g01970 727 Gene3D Cysteine proteinases 173 489 - -
Lapu9g01970 727 SUPERFAMILY Cysteine proteinases 173 492 IPR038765 -
Lapu9g01970 727 Pfam MYND finger 68 105 IPR002893 -
Lapu9g01970 727 MobiDBLite consensus disorder prediction 682 727 - -
Lapu9g01970 727 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 177 483 IPR028889 -
Lapu9g01970 727 ProSitePatterns Zinc finger MYND-type signature. 68 105 IPR002893 -
Lapu9g01970 727 Gene3D - 62 111 - -
Lapu9g01970 727 FunFam Ubiquitin carboxyl-terminal hydrolase 15 171 491 - -
Lapu9g01970 727 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 63 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01970 Lapu-Chr9 34537599 34543677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01970 12 537 Miscellaneous Gene Families AT4G31670 62.548 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01970 K11855 - gmx:100810577 1213.75