Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01968 ATGAACAACTCTTTGACTGTAGCTGCACAAGTTGGGGACATAGACCTGCTCTACAAACTGATTCAGATGCAACCCTATGTGTTGGAGCACATAGACTTCATGCCATTTGTTGATACTCCTCTGCATGTTGCAGCTGCTTCTGGCCATGCCAGTTTTGCCACTGAGGTCATGAGACTCAAACCCTCCTTTGCATGGAAGCTGAACCAGTGTGGCCTTAGCCCCATGCATCTTGCTTTGCAGAACAAGCATCACAGAATGGTGTGTCGCTTTGTGGACATCAACAAGGACCTCGTGAGGGTCAAAGGGAGGGAGGGTCTCACTCCTTTGCATGTTGCAACTCAAACCGGGAGAACTGATCTTGTGGCTAGGTTCTTATCGGCTTGTCCAGAATCCATTGAAGATGTAACAGTTCGAAGTGAGACCACGCTGCATATTGCTGTGAAATATAACCAGTTTCAGACTTTGGAGGTCTTGGTTGGATGGCTTCAGAAAAACTGCCAAAGACATGCTCAGAACCGGGAGAAAAGGGTTCTGAACTGGCAGGATGAGGCAGGCAACACCATTCTCCACCTTTCTGTTCTCAAAGTCTTCCCTCAGGCAGTAAAGTTGTTGATAGATAGCAACATAGACATAAATGCCAAGAACTTTGAGGACTCAACAGCGTTGGACATAGTTGAGATTAACCAAACCGAGGCTCACAGTGCAGAAATCAGAGACATGTTAGTGAGAGGTGGAGCTTTACGTGGCTTTTCACTCGCTACTACTCCACTCGTGGAAGAGCTACGAGCAAAAATCACATTCAATGAGAGAATAGCAATCTTGGTGACTCGCCTCAGAAAGAGAATATCACACGACACACGCAATGCTTTGTTGGTGGTGGCTATTCTTTTCGCAACAAACACCTACGAAGCAGTGCGTAGCCCTCCTGGAGGAGTTTACCAAGGAGAGGGTAGCATGATGCCCAACAAAACGATCACATCATTCCAGCACAGTGAGTATGCAGCAACTCAAGAAATTGTTGGGAAAGTGGTGATGAAAATGCAAAACTTCTATTGGTTCTGGTCCTTCAATACATTCTCCTGTTATCTTTCGATTTTGATGATATGTGTTCTGATGCCACGAGGGCGAATCAGTGTTTTCGTGACCTTTCCACTTTCTATATTTTCTGCATGCTACGTGCTCTCGGTGTTAGTGATATCTCCCAGTTTCAGGTTGAACGTTGCCACTGTGGTTCTGCTATGCATGTTTACACTACTCTACTGTTGGGGAAGTTCCATATACATTAGGTTAGCCAAAAAACTTAAAATGTACGGTCACAAACAGAAAGACAAGTTCAAGTTTGTAGGAGGAAACAGATGGTAA 1362 0.4515 MNNSLTVAAQVGDIDLLYKLIQMQPYVLEHIDFMPFVDTPLHVAAASGHASFATEVMRLKPSFAWKLNQCGLSPMHLALQNKHHRMVCRFVDINKDLVRVKGREGLTPLHVATQTGRTDLVARFLSACPESIEDVTVRSETTLHIAVKYNQFQTLEVLVGWLQKNCQRHAQNREKRVLNWQDEAGNTILHLSVLKVFPQAVKLLIDSNIDINAKNFEDSTALDIVEINQTEAHSAEIRDMLVRGGALRGFSLATTPLVEELRAKITFNERIAILVTRLRKRISHDTRNALLVVAILFATNTYEAVRSPPGGVYQGEGSMMPNKTITSFQHSEYAATQEIVGKVVMKMQNFYWFWSFNTFSCYLSILMICVLMPRGRISVFVTFPLSIFSACYVLSVLVISPSFRLNVATVVLLCMFTLLYCWGSSIYIRLAKKLKMYGHKQKDKFKFVGGNRW* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01968 453 Pfam Ankyrin repeats (3 copies) 75 159 IPR002110 GO:0005515
Lapu9g01968 453 ProSiteProfiles Ankyrin repeat profile. 104 125 IPR002110 GO:0005515
Lapu9g01968 453 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Lapu9g01968 453 ProSiteProfiles Ankyrin repeat region circular profile. 104 125 - -
Lapu9g01968 453 PANTHER HOMEOBOX PROTEIN WARIAI 11 402 - -
Lapu9g01968 453 SUPERFAMILY Ankyrin repeat 5 229 IPR036770 -
Lapu9g01968 453 Pfam Domain of unknown function 284 403 IPR026961 -
Lapu9g01968 453 SMART ANK_2a 138 170 IPR002110 GO:0005515
Lapu9g01968 453 SMART ANK_2a 36 65 IPR002110 GO:0005515
Lapu9g01968 453 SMART ANK_2a 104 134 IPR002110 GO:0005515
Lapu9g01968 453 SMART ANK_2a 184 213 IPR002110 GO:0005515
Lapu9g01968 453 SMART ANK_2a 70 99 IPR002110 GO:0005515
Lapu9g01968 453 Pfam Ankyrin repeats (many copies) 178 224 IPR002110 GO:0005515
Lapu9g01968 453 PRINTS Ankyrin repeat signature 105 120 IPR002110 GO:0005515
Lapu9g01968 453 PRINTS Ankyrin repeat signature 200 214 IPR002110 GO:0005515
Lapu9g01968 453 Gene3D - 1 251 IPR036770 -
Lapu9g01968 453 ProSiteProfiles Ankyrin repeat region circular profile. 184 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01968 Lapu-Chr9 34515332 34517087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01968 4 427 Miscellaneous Gene Families AT5G15500 39.907 1.42e-90 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01968 - - gmx:100790227 743.421