Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01948 ATGGGTCACGTAGGTTCCAGCAAGGACGGCACCAAGGCAGGAGTGGCCGCCGCCGCGATGATGGACATCGACGGCGACGACGACGACCTCGGTGACCTCGACCCGACCAACGCCGAAATCCTCGAAGAATTTGGCGGAGAGGAAGTGTTCCGGAACCATTGCAAGAAGTTCTCGATGTTGTTTTTCGAGGAGTACGGTCTGATCAGCCACCAGATAAACTCCTACAACCACTACGTCAACGTCGGCCTCCAAAGAACCTTCGACGGCTTCGGCGACCTCGTCGTCACGCCCGGCTTCGACCCTTCCAAGAAGGGAGACAACGAGCACTACCGTTACGCCTCCGTCAAGTTCGGCAAGATCAAGCTCGACAAGCCCATGTTCTGGGGTGGTGAGGCTAACGCGCAGGAGTTTAAGATGCTTCCGCGACACGCGCGGCTTCAGAGGATGACCTACGCTTCGAAAATGAAAATCGTAATCAAAGTCCAGGTGTATGTTCCGAAGAAGATTCGGAGTGATAAGTTCAAGACTGGGAAGGAAGAGTTCCTTGATAAGGAGATTCTGAAGGAATATGAGAGGGAGATCATCATTGGGAGATTGCCTGTCATGGTCAAGTCGGATTTATGTTGGACGAAAGGTGAAAAGGATGATTGTGAATTTGACCATGGAGGTTATTTTCTCATCAAGGGTGCAGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTAAAGAGGCTATGGGTTATAAACAGTCCAGGTTGGATGATTGCCTACAAGTCACAGATGAAGAGAAATAGGATGGTTATTAAACTGGTAGGCAATTCTAGGAATGAAGAAGGGGAGAATGGAGACATGTTTCTTACTGTGTATTTTTTATCTGTTGAGGTTCCTGTGTGGGTACTATTTTTTGGTCTTGGTGTCACATCTGATAAAGATGTTGTAGATCTCATTGGTTGTGACAATGATGATGCCAGAATTCAGAATATTCTCCTTGCGTCTGTTTGTGATGCAGATGAGAAATGTGGAGCATTTCGGAAAGGTAGGAATGCAGTTCAATATTTAGAGAAGTGTATAAAAGGTGTCCAATTTCCACCTCCTGAGTCTATTCAGGAGTGTCTTGAAATGTACATCTTTCCTGGAATTAGCGGCTTAAATAGAAAGGCACGCTTCCTTGCATATATGGTGAAGGGTCTCTTGTGGGCTTATACTGGCCGCAGAAAATGTGACAACAGGGATGATTTCCGTAATAAGAGGCTTGAATTGGCTGGTGAGCTTCTTGACCGTGAATTGAAAGTGCACATAGCACATGCTCGAAAGCAAATGTCGAAGGCATTGCAGAGGGACCTTTATGGAGATAGGGATGTACGCCCAATTGAGCATTATCTTGATGCGTCAATAATCACAAATGGTTTACAAAGAGCATTTTCAACAGGAGCATGGTCACATCCGTACAAGAGGATGGAAAGGATCTCTGGTGTGGTTGCTAATGTTGGGCGCACTAATCCCTTACAAACCATGGCTGAGCTAAGAAGGGCTAGGCAGCAGGTCCAGTATACGGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTCCTCTCTACTCCAGATGGTGAAAATTGTGGACTAGTAAAGAATATGGCTGTCACAGGACTGGTAAGCACCGACATATCTAATGCATCTGAATCTTTACTGCCTACATTGTTGGATTGTGGAATGGAAGAACTTGTCAATGATACTACCACTCATCTGGGCAACAAGGACAAAGTCTTCCTAAATGGTGATTGGGTTGGAGTGTGCCCTGATCCCGGTTGGTTTGTGGCGGAACTACGAAGTAAAAGACGTAAAAATGAACTGCCTCATCAGGTGGAAATCAAGAGAGATCAATCTCAACATGAAGTGCGTATATACTCTGATGCAGGAAGGATTCTACGTCCTCTTTTGGTAGTTGGTAATCTACTCAAGATTAAAAGATTTAAATCGGACGGGTACTCTTTCCAGACTCTATTAGAAGAAGGTGTGATTGAGCTGATTGGACCTGAAGAAGAGGAAGACTGCTGTACAGCCTGGGGTGTTAAGTATTTATTTGGAAAAGAGGGGAAAAGATCTGTGAAGTACACTCACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGCTGTTCACTTGTCCCATTTGCCAATCATGACCATGCAAGGAGGGTACTCTACCAATCTCAGAAGCACTCCTCACAGGCTATTGGCTTTTCTACTTTAAACCCGAATATTAGAGTTGATACTTTGTCTCATCAGTTACACTATCCCCAGAGACCCCTTTTTCAAACAATGACTTCAGATTGTCTTGGAAAACCAACCTATCCACTGGGTCAAAGTAAAATACATCCAAAGGCAGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTACATCTAGGATACAATCAAGAGGATTCCTTGGTGATGAACCGTGCTTCATTGCAGCGTGGTATGTTCAGATCTGAGCACATAAGGAGTTACAAATCTGAAATTGAGAATAAGGAATCTTCAGAGAAGAAGCGAAAACCTGAAGACATTGTAAATTTTGGAAAGCTACAAAGTAAAATTGGTCGAGTTGATAGCCTTGATGACGATGGCTTTCCATATGTTGGGGCAAACTTGCAAAGTGGTGATATTATTATTGGAAGATGTGCTGAGTCTGGTGCAGACAATAGTGTAAAGTTAAAGCACACTGAGAGGGGTTATGTGCAAAAGGTTGTGCTGTCTTCAAATGATGAGGGGAAAAATTTTGCTGTGGTTTCATTGAGACAGGTTCGAAGTCCAGTTCTTGGTGACAAGTTCTCCAGTATGCATGGACAAAAGGGAGTTTTGGGATTTCTGGAGTGTCAGGAAAATTTCCCTTTCACAAGACAAGGCATTGTTCCTGACATTGTCATTAATCCGCATGCCTTTCCCTCACGACAAACTCCAGGCCAACTCCTAGAGGCTGCTTTAGGAAAGGGGATTGCTTGTGGTGGTAAACTGAGACATGCTACACCGTTCTCCACTCCTTCTATTGATGACATTACTGACCAGCTTCACAGAGCTGGGTTTTCAAGATGGGGAAACGAGAGGGTATACAATGGAAGGACTGGTGAGATGGTCCGATCACTCATTTTTATGGGACCAACGTTTTACCAACGTCTGCATCATATGGCTGAAGACAAGGTGAAATTCCGCAACACTGGTCCTGTTCACCCTTTGACCCGACAGCCTGTAGCTGACAGAAAACGATTTGGAGGTATCAAGTTCGGTGAAATGGAGCGTGACTGCTTGATAGCTCATGGTGCATCGGCCAACCTGTATGAACGCCTCTTTACACTCAGTGACTCGTCTCAGATTCACATCTGCAGCCGATGCAAAAATGTTTCAAATGTGATATTGCGGCCAGTCTCCGGTGGCCGGAAAGTACGAGGACCTTATTGCCGCCACTGTGAATCTGCAGATGACATTGTGGTTGCCCATGTCCCATATGGGGCAAAATTGTTATGCCAGGAGCTCTTTAGCATGGGAATAAATCTTAAATTTGAAACCCAACTTTGCTAG 3603 0.4482 MGHVGSSKDGTKAGVAAAAMMDIDGDDDDLGDLDPTNAEILEEFGGEEVFRNHCKKFSMLFFEEYGLISHQINSYNHYVNVGLQRTFDGFGDLVVTPGFDPSKKGDNEHYRYASVKFGKIKLDKPMFWGGEANAQEFKMLPRHARLQRMTYASKMKIVIKVQVYVPKKIRSDKFKTGKEEFLDKEILKEYEREIIIGRLPVMVKSDLCWTKGEKDDCEFDHGGYFLIKGAEKTFIAQEQLYLKRLWVINSPGWMIAYKSQMKRNRMVIKLVGNSRNEEGENGDMFLTVYFLSVEVPVWVLFFGLGVTSDKDVVDLIGCDNDDARIQNILLASVCDADEKCGAFRKGRNAVQYLEKCIKGVQFPPPESIQECLEMYIFPGISGLNRKARFLAYMVKGLLWAYTGRRKCDNRDDFRNKRLELAGELLDRELKVHIAHARKQMSKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTDISNASESLLPTLLDCGMEELVNDTTTHLGNKDKVFLNGDWVGVCPDPGWFVAELRSKRRKNELPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKRFKSDGYSFQTLLEEGVIELIGPEEEEDCCTAWGVKYLFGKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLNPNIRVDTLSHQLHYPQRPLFQTMTSDCLGKPTYPLGQSKIHPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIENKESSEKKRKPEDIVNFGKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGKLRHATPFSTPSIDDITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSRCKNVSNVILRPVSGGRKVRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC* 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01948 1200 Pfam RNA polymerase Rpb2, domain 2 275 419 IPR007642 GO:0003677|GO:0003899|GO:0006351
Lapu9g01948 1200 Gene3D RNA polymerase alpha subunit dimerisation domain 1084 1198 - -
Lapu9g01948 1200 Pfam RNA polymerase Rpb2, domain 7 1099 1197 IPR007641 GO:0003677|GO:0003899|GO:0006351
Lapu9g01948 1200 FunFam DNA-directed RNA polymerase subunit beta 407 598 - -
Lapu9g01948 1200 FunFam DNA-directed RNA polymerase subunit beta 1084 1198 - -
Lapu9g01948 1200 Pfam RNA polymerase Rpb2, domain 5 671 717 IPR007647 GO:0006351
Lapu9g01948 1200 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 53 1197 - -
Lapu9g01948 1200 Pfam RNA polymerase beta subunit 66 456 IPR007644 GO:0003677|GO:0003899|GO:0006351
Lapu9g01948 1200 FunFam DNA-directed RNA polymerase subunit beta 59 242 - -
Lapu9g01948 1200 Pfam RNA polymerase Rpb2, domain 6 726 1097 IPR007120 GO:0003677|GO:0003899|GO:0006351
Lapu9g01948 1200 Pfam RNA polymerase Rpb2, domain 3 498 555 IPR007645 GO:0003677|GO:0003899|GO:0006351
Lapu9g01948 1200 Gene3D - 727 1083 IPR037033 GO:0003677|GO:0003899|GO:0006351
Lapu9g01948 1200 Gene3D - 408 594 - -
Lapu9g01948 1200 Gene3D - 60 242 - -
Lapu9g01948 1200 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 59 1194 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lapu9g01948 1200 Pfam RNA polymerase Rpb2, domain 4 595 655 IPR007646 GO:0003677|GO:0003899|GO:0006351
Lapu9g01948 1200 CDD RNA_pol_B_RPB2 67 1196 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lapu9g01948 1200 FunFam DNA-directed RNA polymerase subunit beta 827 946 - -
Lapu9g01948 1200 Gene3D RNA polymerase Rpb2, domain 2 251 407 IPR037034 GO:0003677|GO:0003899|GO:0006351
Lapu9g01948 1200 ProSitePatterns RNA polymerases beta chain signature. 950 962 IPR007121 GO:0003677|GO:0003899|GO:0006351
Lapu9g01948 1200 Gene3D - 757 946 IPR014724 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01948 Lapu-Chr9 34362722 34368251 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01948 K16252 - gmx:100815934 2167.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01948 9 34362722 34368251 Lapu9g01948 9 34362722 34368251 ECH