Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01942 ATGGAGGACGATAAAATAGTTGGATACGTTACCGCGTACCTCAAGAAGAAAGGTTTCACTCAAACCGAGAAGATTTTCCATGAAGAATTTCAGCACAACAAAACCACCAATTCCTCTTCCAGTAATTCCCTTCTCGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGAGTGGTCCCGCTAGGTTCCACGACGGCTACAGCAAACTGCGAACATGGACTTATTCTTCACTGGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCCGTGTTTATCCACTGCTTTATGGACCTTGTCGCGAAAGGACACGTTCAGGAAGCTCGGAATTTCTTCAATACTTTCCGTGAAGACCACGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTACCCATCTGCAGGAAATGGAATTCGCTCACTCGCTTAGACAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATAAATGAGCATATTAACTTTCAAGTTTCCCCTGGACAACCTAGCTTAATTTCTGATGATCCGGAAGCTGTTACCCTAACTGGAAGCAGCCAGGAAGCAGCAAACCGGATAAATCAAAAGGAAATTCATTGGGGGTTACTTGAAGACTCTCTTGAAGAACGGCTGGAGAAGGCAGGGGCCTTACTTTCAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGACGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGGTGGTTCAGTCAAAAAAGTAAAAAAAGACAAGGGTGGTAGTGCAACTGGAAAAAACGCAAAACCTGAAGCTAATACTGTGCCTGCAGCTCCTCGAGTTAAGCCTGAACTCCCATTACCCGTCATCTCAACTGAGGTGGAACAGTCCATCCTTGAGGATTTAAGGAACCGTGTACAGCTCAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATAAATACGCACAATGGTTTAAGCTGTTCATCAATATCCCATGATGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTGGGACAACCGCCTACCAGTTCTCTTTCGCAGGGTGAGAATGACACATCACAAAATGATCAAATGTTTGGGCAAGGTGGTGGGAAAAGGCAGTATACGCTGTTTCAAGGTCATTCAGGACCTGTTTATGCTGCCTCTTTTAGTCCTATGGGGGATTTTATCCTTTCATCCTCAGCAGACTCAACTATTCGATTATGGAGCACCAAACTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGCCCTGTAGGGCATTATTTTGCCAGCTCTTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTGAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCTACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTTGTTGGTCACAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGTGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGACGTTGTCTCACACCTTTGATTGGGCACACGTCCTGTGTCTGGTCTCTCGCATTCAGTTCTGAAGGTTCCATTCTAGCATCTGGATCTGCTGATTGCACTGTTAAATTGTGGGATGTAAATACGAGCACCAAGGCTTCAAGGGCTGAAGAAAATAGAAGTGGGAATGCTAACAGACTTAGATCGCTGAAAACTCTGCCAACCAAATCTACTCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGGGCTCTAGCAAAAAGTGGCTGA 2022 0.451 MEDDKIVGYVTAYLKKKGFTQTEKIFHEEFQHNKTTNSSSSNSLLEPDIANHLLAFSQLESGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLQEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVSPGQPSLISDDPEAVTLTGSSQEAANRINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGEAKEGENDETKKRSIEGGKQGGGSVKKVKKDKGGSATGKNAKPEANTVPAAPRVKPELPLPVISTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQPPTSSLSQGENDTSQNDQMFGQGGGKRQYTLFQGHSGPVYAASFSPMGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSILASGSADCTVKLWDVNTSTKASRAEENRSGNANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALAKSG* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01942 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 460 494 - -
Lapu9g01942 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 450 IPR001680 GO:0005515
Lapu9g01942 673 FunFam Transcription initiation factor TFIID subunit 5 496 666 - -
Lapu9g01942 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 381 IPR001680 GO:0005515
Lapu9g01942 673 MobiDBLite consensus disorder prediction 386 406 - -
Lapu9g01942 673 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Lapu9g01942 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 585 IPR001680 GO:0005515
Lapu9g01942 673 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 2 668 - -
Lapu9g01942 673 MobiDBLite consensus disorder prediction 244 270 - -
Lapu9g01942 673 Gene3D - 579 672 IPR015943 GO:0005515
Lapu9g01942 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 539 - -
Lapu9g01942 673 SUPERFAMILY Taf5 N-terminal domain-like 51 194 IPR037264 -
Lapu9g01942 673 Gene3D - 318 497 IPR015943 GO:0005515
Lapu9g01942 673 ProSitePatterns Trp-Asp (WD) repeats signature. 605 619 IPR019775 -
Lapu9g01942 673 CDD TAF5_NTD2 63 195 IPR007582 -
Lapu9g01942 673 SUPERFAMILY WD40 repeat-like 342 668 IPR036322 GO:0005515
Lapu9g01942 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 627 IPR001680 GO:0005515
Lapu9g01942 673 Gene3D - 498 578 IPR015943 GO:0005515
Lapu9g01942 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 581 - -
Lapu9g01942 673 SMART WD40_4 411 450 IPR001680 GO:0005515
Lapu9g01942 673 SMART WD40_4 341 380 IPR001680 GO:0005515
Lapu9g01942 673 SMART WD40_4 453 492 IPR001680 GO:0005515
Lapu9g01942 673 SMART WD40_4 537 576 IPR001680 GO:0005515
Lapu9g01942 673 SMART WD40_4 579 618 IPR001680 GO:0005515
Lapu9g01942 673 SMART WD40_4 495 534 IPR001680 GO:0005515
Lapu9g01942 673 ProSitePatterns Trp-Asp (WD) repeats signature. 563 577 IPR019775 -
Lapu9g01942 673 Pfam WD40 associated region in TFIID subunit, NTD2 domain 61 189 IPR007582 -
Lapu9g01942 673 Gene3D TFIID subunit TAF5, NTD2 domain 45 194 IPR037264 -
Lapu9g01942 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 621 - -
Lapu9g01942 673 CDD WD40 418 668 - -
Lapu9g01942 673 MobiDBLite consensus disorder prediction 277 291 - -
Lapu9g01942 673 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Lapu9g01942 673 PRINTS G protein beta WD-40 repeat signature 605 619 IPR020472 -
Lapu9g01942 673 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Lapu9g01942 673 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 450 - -
Lapu9g01942 673 MobiDBLite consensus disorder prediction 244 307 - -
Lapu9g01942 673 ProSitePatterns Trp-Asp (WD) repeats signature. 367 381 IPR019775 -
Lapu9g01942 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Lapu9g01942 673 ProSiteProfiles Trp-Asp (WD) repeats profile. 460 501 IPR001680 GO:0005515
Lapu9g01942 673 Pfam WD domain, G-beta repeat 538 576 IPR001680 GO:0005515
Lapu9g01942 673 Pfam WD domain, G-beta repeat 350 380 IPR001680 GO:0005515
Lapu9g01942 673 Pfam WD domain, G-beta repeat 457 492 IPR001680 GO:0005515
Lapu9g01942 673 Pfam WD domain, G-beta repeat 415 450 IPR001680 GO:0005515
Lapu9g01942 673 Pfam WD domain, G-beta repeat 497 534 IPR001680 GO:0005515
Lapu9g01942 673 Pfam WD domain, G-beta repeat 580 618 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01942 Lapu-Chr9 34297345 34306975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01942 412 621 Miscellaneous Gene Families AT5G08390 32.243 8.17e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01942 K03130 - gmx:100805953 1236.48