Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01910 ATGGGTACCGTCTCTCTTCTCAAGTGCTACAGACCCTTCTTCTCTACGCTTTTTCCTCGCTCCGCTCCATCCACACCCCACGCCGCCATCTTCAGCCCGAAGAACCCCCCGTCCTTCTGCGCCAGCTCATCTCCGCCGTTGACGGCGGGGAAGGATTGCGCCAAATCCGACGCCGAGGCTCCCACCCTGAAGAATTTCGCGCCTGAGGTGTGGCTGCACAACACCATGAGTAAAACGAAGCAACTCTTCAAACCCAAAGTAGAATCCAAAGTGGGAATGTACGTGTGCGGCGTCACCGCCTACGATCTCAGCCATATTGGACATGCTCGCGTCTATATCAATTTCGACCTTCTTTACAGGTTTCTCTCTTCTCTTCGCAGATACTTTAAGCATTTGGGATTTGAAGTTTGTTATGTTCGCAATTTTACTGACGTTGATGACAAGATAATTGCTAGAGCAAAAGAGTTGGGAGAAGATCCAATAAGTTTGAGCCGGCGCTATTGTGAAGAGTTCTGTCAAGACATGGTAACTCTTAATTGTCTGACTCCCTCTGTGGAACCAAAGGTCTCGGAGCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCCTACGTTGTTGATGGGGATGTATACTTTAATGTAGAAAAATTTTCAGAATATGGGAAACTATCTAGTCGAGATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCAGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTGTGGAAGTCTGCGAAGCCAGGGGAGCCATTTTGGGAAAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCCATGAGTGCAGCTTATCTTGGTTACTCTTTTGACATTCACGGTGGAGGAATTGATCTTGTGTTTCCTCACCATGAGAATGAAATTGCTCAGAGTTGTGCTGCATGTAAGAAAAGTGACATAAGCGTATGGATGCACAATGGTTTTGTTACCATTGATTCTGTGAAAATGTCAAAATCTTTGGGAAATTTTTTCACAATACGTCAGGTTATAGACACTTACCATCCACTGGCTTTGAGATATTTTTTGATGAGTGCCCATTATCGATCTCCTGTTAACTACTCAAATATACAGCTCGAAAGTGCTTCAGACCGTATTTATTATATATATGAGACATTACACGAATGCAAAAGCGTTTTGAATCAGCATGATCAGACAATTGGAAAGGATTCCATTCCACCAGATACTTTGAATATTATTGATAAGTTCCATGGTGTATTTCTGACTTCAATGTCGGATGATCTTCACACTCCAGTTGTTTTGGCTGGAATGTCTGATCCCTTAAAATCAATCAATGATTTGCTGCATACCCGTAAGGGGAAAAAACAACAATTTCGAATAGAGTCACTTGCAGCTTTAGAGAAGAGCATCCGGGATGTCCTTACTGTTTTAGGACTGATGCCCACAAGTTACTATGAGGTTTTGCAGCAGCTTAAGGAAAAAGCTTTAAAGCGTGCAAACCTGACAGAAGACAAAGTCTTGCAGAAAATTGAAGAACGGGCTGCTGCTAGAATAGAAAAGGAGTACGCAAAATCGGATGCAATTAGGAAGGATTTGGCTGTTCTTGGTATTACTCTTATGGACAGTCCAAATGGCACAACTTGGAGGCCGACCATTCCTCTTCCACTTCAAGAGCTGCTCTAG 1716 0.4365 MGTVSLLKCYRPFFSTLFPRSAPSTPHAAIFSPKNPPSFCASSSPPLTAGKDCAKSDAEAPTLKNFAPEVWLHNTMSKTKQLFKPKVESKVGMYVCGVTAYDLSHIGHARVYINFDLLYRFLSSLRRYFKHLGFEVCYVRNFTDVDDKIIARAKELGEDPISLSRRYCEEFCQDMVTLNCLTPSVEPKVSEHMPQIIDMIEKILNNGYAYVVDGDVYFNVEKFSEYGKLSSRDLEDNRAGERVAVDSRKKNPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISVWMHNGFVTIDSVKMSKSLGNFFTIRQVIDTYHPLALRYFLMSAHYRSPVNYSNIQLESASDRIYYIYETLHECKSVLNQHDQTIGKDSIPPDTLNIIDKFHGVFLTSMSDDLHTPVVLAGMSDPLKSINDLLHTRKGKKQQFRIESLAALEKSIRDVLTVLGLMPTSYYEVLQQLKEKALKRANLTEDKVLQKIEERAAARIEKEYAKSDAIRKDLAVLGITLMDSPNGTTWRPTIPLPLQELL* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01910 571 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 417 561 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lapu9g01910 571 SUPERFAMILY Nucleotidylyl transferase 70 383 - -
Lapu9g01910 571 Gene3D - 379 561 - -
Lapu9g01910 571 FunFam Cysteine--tRNA ligase 69 377 - -
Lapu9g01910 571 CDD CysRS_core 71 379 IPR032678 -
Lapu9g01910 571 PANTHER CYSTEINYL-TRNA SYNTHETASE 65 565 IPR024909 -
Lapu9g01910 571 Gene3D HUPs 53 378 IPR014729 -
Lapu9g01910 571 Pfam tRNA synthetases class I (C) catalytic domain 83 386 IPR032678 -
Lapu9g01910 571 Hamap Cysteine--tRNA ligase [cysS]. 70 562 IPR015803 GO:0004817|GO:0005524|GO:0006423
Lapu9g01910 571 NCBIfam cysteine--tRNA ligase 72 560 IPR015803 GO:0004817|GO:0005524|GO:0006423
Lapu9g01910 571 PRINTS Cysteinyl-tRNA synthetase signature 93 104 IPR024909 -
Lapu9g01910 571 PRINTS Cysteinyl-tRNA synthetase signature 296 317 IPR024909 -
Lapu9g01910 571 PRINTS Cysteinyl-tRNA synthetase signature 265 283 IPR024909 -
Lapu9g01910 571 Coils Coil 496 516 - -
Lapu9g01910 571 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 379 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01910 Lapu-Chr9 33894785 33899899 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01910 K01883 - gmx:100786700 1040.41