Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01822 ATGCCTCTCGGAGAAAGGTTAGGGGATAAGAGCGAGTCTCGCTACTGCGGTGTGGAGACCGATTTCAACGATGACATGCCACACGTCCTTCACTTCAACCTCTTTACCGGAAGCTTCGATTTCGTTGTTGCTCCTTTGATGGATCCTTCTTATCGACCAAGTTTATTGCAAAAGGATGGTTTGGGGTCTGGTGTTCTGCCATTTGCTGGGTCAGACTTGGTCTTGAGTCCATCCCAATGGAGTAGTCATGTAGTGGGAAAAATTAGCTCATGGATAGACCTGGATTCAGAGGATGAAACCCTAAGGATAGATTCTGAAACTACACTTAAACAAGAAATTGCTTGGGCATCTCATCTCTCTTTACAGGCCTGCCTGCTTCCTGCTCCCAAGGGCACTTCTTGTGCTAATTATGCTCGATGTGTAAATCAAATCTTACAGGGTGCAAATAATATTCAGTTGTGGCTTAGGATTCCATTGGTGAAGCCTGATGATGACTCCATGGATGCAAAGTCTGTTACTTTTGATGACTCTTGGGAATCTTGGAATTCATTTCGTCTGCTGTGCGAGCATCATAGTCAACTGTCAGTTGCACTTGATATTCTGAGTACTCTTCCTTCCACAAATTCACTAGGACGTTGGTTTGGGGAGCCTGTTAGAGCAGCTATATTAAATACTGATTGCTTCCTAACTAATTCTCATGGCTGTCCATGCCTCTCCAAGCGTCACCAGAGGTTAATTTCTGGATTTTTTAACCATTCTATTCAGATCATTATATCTGGAAATTCTGTTCATCCAAAAGCAAGTATGGATGCAAATGATAATTCTGATAAAGATTCACAAAGACATCCCTTGCGGCCCTATCTGGACTATGTTGGATATCTATACCAAAGAATGGATCCTCTTCCTGAGCAAGAACGTTTTGAGCTTGGTTACAGGGATTTTTTACAGTCACCCTTGCAACCTTTGATGGATAATTTAGAAGCTCAGACTTATGAGACTTTTGAGAAAGATGCAGTGAAATACATTCAGTACCAAAGAGCAGTGAGTAAAGCATTATTGGACAGGGTTCCTGATGAAGAGGCATCTGCTAAAACCATTGTATTGATGGTTGTTGGGGCAGGGCGTGGGCCTCTTGTGCGGGCGTCATTGCAGGCTGCTGAAGAAACTGGGCGGAAGCTCAAAGTTTATGCTGTTGAAAAGAATCCAAATGCAGTTGTTACCCTACATGCATTGGTCAAGTTAGAAGGATGGGAGGACACTGTGACCATAGTTTCAAGTGACATGCGTCATTGGAATTCCCCTGAAAAAGCTGACATATTGGTTAGTGAATTGCTAGGTTCTTTTGGCGACAATGAACTTTCTCCCGAGTGCCTTGATGGAGCTCAAAGGTTTCTAAAGCAAGATGGAATTTCAATACCATCTTCGTACACAAGTTTCCTCCAACCAGTGACAGCTTCGAAGTTGTATAATGATGTTAAGGCGCACAAAGATCTTGTACATTTTGAAACTGCTTATGTTGTGAAACTACACAATGTAGCCAGACTTGCACCATCTCAACCTGTTTTTACATTTGCTCATCCAAAACGCTCTGAACATGAAAGCAATCAGCGTTATGAAAAGTTGAATTTTGTGATTCCTAATGACACTGGGTCTGCAATGGTACACGGATTTGCTGGTTACTTTGATGCAACACTTTACAAGGATGTGCATCTTGGAATTGAACCTTCAACAGCAACACCAAACATGTTTAGCTGGTTTGCAATATTTTTCCCATTAAGGGCACCCATTTGTGTAGGTCCTGGTTCTACTCTTGAAGTTCATTTTTGGCGCTGTTGTGGTTCTACAAAGGTTTGGTATGAGTGGTGTGTTGCTTCTCCTTCGTCTTCCCCAATTCACAACAGCAATGGACGTTCATACTGGGTTGGGCTTTAG 1932 0.4265 MPLGERLGDKSESRYCGVETDFNDDMPHVLHFNLFTGSFDFVVAPLMDPSYRPSLLQKDGLGSGVLPFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDETLRIDSETTLKQEIAWASHLSLQACLLPAPKGTSCANYARCVNQILQGANNIQLWLRIPLVKPDDDSMDAKSVTFDDSWESWNSFRLLCEHHSQLSVALDILSTLPSTNSLGRWFGEPVRAAILNTDCFLTNSHGCPCLSKRHQRLISGFFNHSIQIIISGNSVHPKASMDANDNSDKDSQRHPLRPYLDYVGYLYQRMDPLPEQERFELGYRDFLQSPLQPLMDNLEAQTYETFEKDAVKYIQYQRAVSKALLDRVPDEEASAKTIVLMVVGAGRGPLVRASLQAAEETGRKLKVYAVEKNPNAVVTLHALVKLEGWEDTVTIVSSDMRHWNSPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFLQPVTASKLYNDVKAHKDLVHFETAYVVKLHNVARLAPSQPVFTFAHPKRSEHESNQRYEKLNFVIPNDTGSAMVHGFAGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRAPICVGPGSTLEVHFWRCCGSTKVWYEWCVASPSSSPIHNSNGRSYWVGL* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01822 643 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 330 642 IPR029063 -
Lapu9g01822 643 Pfam PRMT5 oligomerisation domain 475 641 IPR035248 -
Lapu9g01822 643 PIRSF PRMT5 3 643 IPR007857 GO:0006479|GO:0008168|GO:0035246
Lapu9g01822 643 Gene3D Vaccinia Virus protein VP39 307 474 IPR029063 -
Lapu9g01822 643 Gene3D - 14 304 - -
Lapu9g01822 643 Pfam PRMT5 arginine-N-methyltransferase 303 472 IPR035075 -
Lapu9g01822 643 FunFam Protein arginine N-methyltransferase 5 475 643 - -
Lapu9g01822 643 Gene3D - 475 643 - -
Lapu9g01822 643 FunFam Protein arginine N-methyltransferase 14 304 - -
Lapu9g01822 643 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 9 643 IPR025799 GO:0016274|GO:0018216
Lapu9g01822 643 FunFam Protein arginine N-methyltransferase 5 307 474 - -
Lapu9g01822 643 Pfam PRMT5 TIM barrel domain 39 297 IPR035247 -
Lapu9g01822 643 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 315 621 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01822 Lapu-Chr9 33077597 33087188 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01822 K02516 - gmx:100782245 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01822 9 33077597 33087188 Lapu9g01822 9 33077597 33087188 ECH