Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01787 ATGTCTTCCTCTCATCTTCCTGCCACAACTGAGTCACTTGCTCTGGCAACTGAGGCCGCAAACGCAACTGAGGCTATCTCCATTCTTTATCGGGTACTTGATGATCCTTCTTCTTCACCAGATGCTCTGCGTATGAAAGAGCAAGCAATCACACTCCTCACCAAGCATCTCACGGAAGAGAATAGGGGAGAGGATCTGCGCAGCCTTCTCACTCAGTTGAGGCCATTCTTCTCCTTGATACCCAAGGCTAAAACTGCAAAGATTGTTAGGGGAATAATTGACTCGGTTGCTAAAATACCAGGGACGTCTAATCTACAAATTGCACTATGTAAAGAAATGGTGCTATGGACTCGTGCTGAAAAGCGAACCTTCCTGAGGCAGCGAGTTGAGGCAAGACTTGCAGCACTTCTGATGGAAAATAAGGAGTATTCTGAAGCTTTGACTCTTCTTTCTGGCTTGGTCAAAGAGGTTAGGAGATTAGATGACAAACTTCTTCTTGTAGACATAGATTTGCTGGAAAGCAAGCTGCATTTCTCCTTAAGAAACCTTCCTAAGGCAAAAGCTGCTCTCACGGCAGCAAGAACAGCTGCAAATGCGATTTATGTGCCTCCAGCACAACAAGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAGGAGAAGGATTATAAAACTGCTTATAGCTATTTCTTTGAAGCTTTTGAATCATTCAATGCTCTTGATGACCCCAAGGCTGTATTTAGCCTGAAATATATGTTGTTGTGTAAGATCATGGTGAATCAAGCTGATGACGTAGGGGGAATTATTTCCTCTAAAGCAGGACTGCAATATCTTGGACCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACATTCTAAGCGGTCCCTTAGGTTGTTTGAAATTGCTTTGCGGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTCCACAGGCACCTTTCATCCCTGTACGATACCCTACTGGAGCAGAATCTTTGCAGATTGATTGAGCCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCGTTGATCATGTGGAGCGAAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTTGTCATATTTGACGATCCGAAGACCGATGCTATATATCCTGCAACTCTAGAGACCATTTCCAATATTGGGAAAGTTGTCGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA 1269 0.4405 MSSSHLPATTESLALATEAANATEAISILYRVLDDPSSSPDALRMKEQAITLLTKHLTEENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSNLQIALCKEMVLWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAHSKRSLRLFEIALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPVDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01787 422 Pfam PCI domain 285 386 IPR000717 -
Lapu9g01787 422 SMART PCI/PINT associated module 143 319 - -
Lapu9g01787 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 18 128 IPR040773 -
Lapu9g01787 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Lapu9g01787 422 SUPERFAMILY TPR-like 131 323 IPR011990 GO:0005515
Lapu9g01787 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Lapu9g01787 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Lapu9g01787 422 Coils Coil 126 146 - -
Lapu9g01787 422 Gene3D - 46 421 - -
Lapu9g01787 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 40 418 - -
Lapu9g01787 422 FunFam 26S proteasome non-ATPase regulatory subunit 11 46 421 - -
Lapu9g01787 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01787 Lapu-Chr9 32744784 32749408 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01787 K03036 - gmx:100780845 730.324