Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01785 ATGGGGATAGCAGAAGTATGCTCCAGGTTCCTTGGGGACTTTTTACAAGCATTGAAATGCTCCCCACAGAGCTCAGTGTCTTCTCGTCATCACCTTGATCACAATCATCATCATCATCATCATCATGCATGCAAGGCTGAGAAGATGGTGAAACTTGATGAGAAGATGGTTGGTGCTCTTGTTACTGTTTTTGGCATGGAAAGCAATGGAAGAATCAAGAAGGAAAGTGCAAGGGAAGTGGTGGAGAAGCTTGGTTTGGTGTGTGATAAGGCTTCATCAGGGTTTGAGATAGGTGAGGGAGGGTTGATGGATGATGAAGTGCCTGTGGAAGAGGTGCTTGGTGAGTTGGAGGACATGTCAAAGCGCAGTGAGTTGTTGCATGAAGCCTTCAAAATCTTTGATGAGGATGGAGATGGATACATAGATGCAATGGAGTTGAAGAGGGTGCTTGATTGCTTGGGTTTGGACAAGGGTTGGGATATGAATGCCATTGAAAAGATGGTGAAGGTTGCAGATTTGAACTTTGATGGCAAGGTTGATTTTGGTGAGTTTGAATTGATGATGGGGTAG 570 0.4474 MGIAEVCSRFLGDFLQALKCSPQSSVSSRHHLDHNHHHHHHHACKAEKMVKLDEKMVGALVTVFGMESNGRIKKESAREVVEKLGLVCDKASSGFEIGEGGLMDDEVPVEEVLGELEDMSKRSELLHEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNAIEKMVKVADLNFDGKVDFGEFELMMG* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01785 189 CDD EFh 126 184 IPR002048 GO:0005509
Lapu9g01785 189 ProSitePatterns EF-hand calcium-binding domain. 134 146 IPR018247 -
Lapu9g01785 189 SMART efh_1 163 189 IPR002048 GO:0005509
Lapu9g01785 189 SMART efh_1 125 153 IPR002048 GO:0005509
Lapu9g01785 189 SUPERFAMILY EF-hand 44 188 IPR011992 -
Lapu9g01785 189 ProSiteProfiles EF-hand calcium-binding domain profile. 121 156 IPR002048 GO:0005509
Lapu9g01785 189 Pfam EF-hand domain pair 125 188 IPR002048 GO:0005509
Lapu9g01785 189 PANTHER CALCIUM BINDING PROTEIN 121 188 - -
Lapu9g01785 189 ProSiteProfiles EF-hand calcium-binding domain profile. 159 189 IPR002048 GO:0005509
Lapu9g01785 189 FunFam Calmodulin A 112 189 - -
Lapu9g01785 189 Gene3D - 9 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01785 Lapu-Chr9 32729840 32730409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu9g01785 34 188 EF-hand Containing Proteins AT4G20780 31.868 8.50e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01785 - - gmx:100527700 286.189