Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu9g01763 ATGGCAACGCAATCGTTGGACGAAGAGACAACTAAGAAAGTGATACGACAAGTGGAGTTTTATTTCAGCGATAGCAACCTTCTAACCGATGGTTTTATGAGGAAGAGTATCACTGAAAGCGAAGATGGCATGATTAGTTTGGCTCTGATTTGCTCTTTTAATCGGATGCGTAAGCACCTTACTTTGGGTGATGTGAAGCCCGATGAAGTGCCCCAAGATATCGTGAATGCTGTTGCTCAAACTTTGAGAGTTTCGGCTTCACTCAAGGTCTCTGAAGATGGGAAAAAAATTGGCAGAACAACTGAACTTCCGAAGCCAGAAGAGGTTGAGCAGGTGGAGATAAGAACACTTGCTGTATCACCATTTGAATATGATCTGAAGCTTGAAGATGTGGAGAAGTTCTTTGGTCAATATGCTAAGGTTAATAGTGTTCGGCTTCCTCATCATGTTGGAGACAAAAGGTTCTTCTGTGGCACTGCCCTTGTTGAATTCTCATCAGATGAAGAAGTAGAAAAAATTATGAAAGAAAAATTGGTGTATGCCGGGCTTGAGTTAGAATTAAAACCCAAGAAGGACTTTGATTCAGAGAGGGAAAAAGAATTAGAAGATTTTAAAAAATCTCGTCCAACTTTGGGTTCAAATCAGCAGAATAACTCAAATGAAGAAGACAGCTACCCTAAAGGCTTAATTATTGCCTTCAAACTAAAGAGTACTTCGGACCAAAGCGTTGAAGATCAACATGCCCATGACAATAGTGCTGTCCCCAAAACAGATGAAAAGCCTGAAATTGCTGCTGGAGAAAGTGACCAAAAGGTAGTTGAAGAAAACAATGATACGAAGGAAGCAAAGGAAACTGAAAGCGAAGGAAAGAATGAAACAAAAGAAACTGAAGGTGGAGAAAAGCAGCAACAAGCTGGTGAAAAGTTTTCTGCCGCTGCTTACAAGGACAACATGGATGTTGTCTCACGTGAGGACTTAAGGAGTGTCTTTGAAAAATTTGGCACAGTGAAGTACATCGATTTCAAGATTGGAGAAGTGTCAGGATATATCCGATTTGAAGAAACGGAAGCTGCTCAGAAAGCCCGTGCCGCTGCAGTTATTTCAGAAAATGGCGGCTTGGTTGTAAAAAATTTCATTGCTATTTTAGATCCAGTGACCGGTGAGGCCGAAAGAGAATACTGGAGCCAGCTTCGAGGTAATCAAGGCAAGCACAGAGAATTTAAGAATAAGCAGGGAAGGGGAGGATGGCATGGTAGAGGGAGCAAACATGGACGCGGTAGAGATAATGGTTCTAGAGTTGGTCGCCCAAATAAGTCTCAGAAAATTGGTGCTGCATAA 1338 0.4178 MATQSLDEETTKKVIRQVEFYFSDSNLLTDGFMRKSITESEDGMISLALICSFNRMRKHLTLGDVKPDEVPQDIVNAVAQTLRVSASLKVSEDGKKIGRTTELPKPEEVEQVEIRTLAVSPFEYDLKLEDVEKFFGQYAKVNSVRLPHHVGDKRFFCGTALVEFSSDEEVEKIMKEKLVYAGLELELKPKKDFDSEREKELEDFKKSRPTLGSNQQNNSNEEDSYPKGLIIAFKLKSTSDQSVEDQHAHDNSAVPKTDEKPEIAAGESDQKVVEENNDTKEAKETESEGKNETKETEGGEKQQQAGEKFSAAAYKDNMDVVSREDLRSVFEKFGTVKYIDFKIGEVSGYIRFEETEAAQKARAAAVISENGGLVVKNFIAILDPVTGEAEREYWSQLRGNQGKHREFKNKQGRGGWHGRGSKHGRGRDNGSRVGRPNKSQKIGAA* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu9g01763 445 Gene3D - 297 413 IPR012677 -
Lapu9g01763 445 CDD LA_like_plant 10 99 - -
Lapu9g01763 445 ProSiteProfiles xRRM domain profile. 300 430 IPR014886 GO:0003723
Lapu9g01763 445 MobiDBLite consensus disorder prediction 194 225 - -
Lapu9g01763 445 MobiDBLite consensus disorder prediction 398 445 - -
Lapu9g01763 445 SMART la 8 100 IPR006630 -
Lapu9g01763 445 FunFam La protein 2 6 106 - -
Lapu9g01763 445 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Lapu9g01763 445 SMART rrm1_1 312 376 IPR000504 GO:0003723
Lapu9g01763 445 SMART rrm1_1 116 188 IPR000504 GO:0003723
Lapu9g01763 445 MobiDBLite consensus disorder prediction 240 302 - -
Lapu9g01763 445 SUPERFAMILY RNA-binding domain, RBD 321 405 IPR035979 GO:0003676
Lapu9g01763 445 MobiDBLite consensus disorder prediction 398 413 - -
Lapu9g01763 445 PANTHER LUPUS LA PROTEIN-RELATED 10 302 IPR045180 -
Lapu9g01763 445 Pfam La domain 14 82 IPR006630 -
Lapu9g01763 445 Gene3D - 2 104 IPR036388 -
Lapu9g01763 445 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Lapu9g01763 445 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Lapu9g01763 445 MobiDBLite consensus disorder prediction 208 224 - -
Lapu9g01763 445 Pfam RNA binding motif 321 413 IPR014886 GO:0003723
Lapu9g01763 445 CDD RRM1_La 116 188 - -
Lapu9g01763 445 Gene3D - 108 206 IPR012677 -
Lapu9g01763 445 MobiDBLite consensus disorder prediction 240 306 - -
Lapu9g01763 445 SUPERFAMILY RNA-binding domain, RBD 107 192 IPR035979 GO:0003676
Lapu9g01763 445 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Lapu9g01763 445 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lapu9g01763 445 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Lapu9g01763 445 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu9g01763 Lapu-Chr9 32497565 32500980 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu9g01763 K11090 - gmx:100786016 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu9g01763 9 32497565 32500980 Lapu9g01763 9 32497565 32500980 ECH